Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Cpsf4Q8BQZ5 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Cpsf4Q8BQZ5 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cpsf4Q8BQZ5 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cpsf4Q8BQZ5 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC22.64■■□□□ 1.21
Cpsf4Q8BQZ5 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
Cpsf4Q8BQZ5 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
Cpsf4Q8BQZ5 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
Cpsf4Q8BQZ5 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Cpsf4Q8BQZ5 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf4Q8BQZ5 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf4Q8BQZ5 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf4Q8BQZ5 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf4Q8BQZ5 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf4Q8BQZ5 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22.63■■□□□ 1.21
Cpsf4Q8BQZ5 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf4Q8BQZ5 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
Cpsf4Q8BQZ5 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf4Q8BQZ5 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC22.61■■□□□ 1.21
Cpsf4Q8BQZ5 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cpsf4Q8BQZ5 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cpsf4Q8BQZ5 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cpsf4Q8BQZ5 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Cpsf4Q8BQZ5 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.61■■□□□ 1.21
Cpsf4Q8BQZ5 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC22.61■■□□□ 1.21
Cpsf4Q8BQZ5 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
Cpsf4Q8BQZ5 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC22.6■■□□□ 1.21
Cpsf4Q8BQZ5 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
Cpsf4Q8BQZ5 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Cpsf4Q8BQZ5 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cpsf4Q8BQZ5 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cpsf4Q8BQZ5 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cpsf4Q8BQZ5 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC22.59■■□□□ 1.21
Cpsf4Q8BQZ5 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Cpsf4Q8BQZ5 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Cpsf4Q8BQZ5 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Cpsf4Q8BQZ5 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.57■■□□□ 1.2
Cpsf4Q8BQZ5 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Cpsf4Q8BQZ5 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC22.57■■□□□ 1.2
Cpsf4Q8BQZ5 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC22.56■■□□□ 1.2
Cpsf4Q8BQZ5 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC22.56■■□□□ 1.2
Cpsf4Q8BQZ5 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Cpsf4Q8BQZ5 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.55■■□□□ 1.2
Cpsf4Q8BQZ5 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Cpsf4Q8BQZ5 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf4Q8BQZ5 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf4Q8BQZ5 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf4Q8BQZ5 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf4Q8BQZ5 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf4Q8BQZ5 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Cpsf4Q8BQZ5 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cpsf4Q8BQZ5 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cpsf4Q8BQZ5 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf4Q8BQZ5 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf4Q8BQZ5 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf4Q8BQZ5 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC22.5■■□□□ 1.19
Cpsf4Q8BQZ5 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Cpsf4Q8BQZ5 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf4Q8BQZ5 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf4Q8BQZ5 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Cpsf4Q8BQZ5 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Cpsf4Q8BQZ5 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Cpsf4Q8BQZ5 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC22.48■■□□□ 1.19
Cpsf4Q8BQZ5 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf4Q8BQZ5 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC22.48■■□□□ 1.19
Cpsf4Q8BQZ5 Gm30023-201ENSMUST00000197970 889 ntBASIC22.48■■□□□ 1.19
Cpsf4Q8BQZ5 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf4Q8BQZ5 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf4Q8BQZ5 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf4Q8BQZ5 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf4Q8BQZ5 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Cpsf4Q8BQZ5 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.47■■□□□ 1.19
Cpsf4Q8BQZ5 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Cpsf4Q8BQZ5 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC22.46■■□□□ 1.19
Cpsf4Q8BQZ5 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
Cpsf4Q8BQZ5 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
Cpsf4Q8BQZ5 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
Cpsf4Q8BQZ5 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Cpsf4Q8BQZ5 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Cpsf4Q8BQZ5 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Cpsf4Q8BQZ5 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC22.43■■□□□ 1.18
Cpsf4Q8BQZ5 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Cpsf4Q8BQZ5 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Cpsf4Q8BQZ5 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Cpsf4Q8BQZ5 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Cpsf4Q8BQZ5 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC22.42■■□□□ 1.18
Cpsf4Q8BQZ5 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Cpsf4Q8BQZ5 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Cpsf4Q8BQZ5 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC22.42■■□□□ 1.18
Cpsf4Q8BQZ5 AC122428.3-201ENSMUST00000215551 2290 ntBASIC22.41■■□□□ 1.18
Cpsf4Q8BQZ5 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Cpsf4Q8BQZ5 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 70.1 ms