Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf220Q6PDX6 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf220Q6PDX6 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf220Q6PDX6 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
Rnf220Q6PDX6 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Rnf220Q6PDX6 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Rnf220Q6PDX6 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
Rnf220Q6PDX6 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Rnf220Q6PDX6 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Rnf220Q6PDX6 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC22.08■■□□□ 1.13
Rnf220Q6PDX6 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Rnf220Q6PDX6 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Rnf220Q6PDX6 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
Rnf220Q6PDX6 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Rnf220Q6PDX6 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Rnf220Q6PDX6 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Rnf220Q6PDX6 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Rnf220Q6PDX6 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22.05■■□□□ 1.12
Rnf220Q6PDX6 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Rnf220Q6PDX6 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Rnf220Q6PDX6 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Rnf220Q6PDX6 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Rnf220Q6PDX6 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Rnf220Q6PDX6 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rnf220Q6PDX6 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rnf220Q6PDX6 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rnf220Q6PDX6 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC22.03■■□□□ 1.12
Rnf220Q6PDX6 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Rnf220Q6PDX6 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Rnf220Q6PDX6 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
Rnf220Q6PDX6 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Rnf220Q6PDX6 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Rnf220Q6PDX6 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.99■■□□□ 1.11
Rnf220Q6PDX6 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Rnf220Q6PDX6 H3f3aos-201ENSMUST00000097448 2905 ntBASIC21.99■■□□□ 1.11
Rnf220Q6PDX6 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rnf220Q6PDX6 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Rnf220Q6PDX6 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rnf220Q6PDX6 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rnf220Q6PDX6 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Rnf220Q6PDX6 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Rnf220Q6PDX6 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.96■■□□□ 1.11
Rnf220Q6PDX6 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.96■■□□□ 1.11
Rnf220Q6PDX6 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Rnf220Q6PDX6 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Rnf220Q6PDX6 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
Rnf220Q6PDX6 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Rnf220Q6PDX6 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rnf220Q6PDX6 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rnf220Q6PDX6 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC21.92■■□□□ 1.1
Rnf220Q6PDX6 Gm24804-201ENSMUST00000174982 85 ntBASIC21.92■■□□□ 1.1
Rnf220Q6PDX6 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.92■■□□□ 1.1
Rnf220Q6PDX6 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Rnf220Q6PDX6 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Rnf220Q6PDX6 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Rnf220Q6PDX6 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.1
Rnf220Q6PDX6 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 9.7 ms