Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf220Q6PDX6 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf220Q6PDX6 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf220Q6PDX6 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
Rnf220Q6PDX6 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Rnf220Q6PDX6 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Rnf220Q6PDX6 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
Rnf220Q6PDX6 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC22.13■■□□□ 1.13
Rnf220Q6PDX6 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
Rnf220Q6PDX6 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Rnf220Q6PDX6 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Rnf220Q6PDX6 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Rnf220Q6PDX6 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Rnf220Q6PDX6 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC22.08■■□□□ 1.13
Rnf220Q6PDX6 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Rnf220Q6PDX6 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Rnf220Q6PDX6 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
Rnf220Q6PDX6 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Rnf220Q6PDX6 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Rnf220Q6PDX6 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Rnf220Q6PDX6 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Rnf220Q6PDX6 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Rnf220Q6PDX6 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22.05■■□□□ 1.12
Rnf220Q6PDX6 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Rnf220Q6PDX6 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Rnf220Q6PDX6 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Rnf220Q6PDX6 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Rnf220Q6PDX6 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Rnf220Q6PDX6 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rnf220Q6PDX6 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rnf220Q6PDX6 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Rnf220Q6PDX6 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC22.03■■□□□ 1.12
Rnf220Q6PDX6 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Rnf220Q6PDX6 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Rnf220Q6PDX6 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
Rnf220Q6PDX6 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Rnf220Q6PDX6 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Rnf220Q6PDX6 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.99■■□□□ 1.11
Rnf220Q6PDX6 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Rnf220Q6PDX6 H3f3aos-201ENSMUST00000097448 2905 ntBASIC21.99■■□□□ 1.11
Rnf220Q6PDX6 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rnf220Q6PDX6 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Rnf220Q6PDX6 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rnf220Q6PDX6 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Rnf220Q6PDX6 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Rnf220Q6PDX6 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Rnf220Q6PDX6 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.96■■□□□ 1.11
Rnf220Q6PDX6 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.96■■□□□ 1.11
Rnf220Q6PDX6 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Rnf220Q6PDX6 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Rnf220Q6PDX6 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
Rnf220Q6PDX6 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Rnf220Q6PDX6 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Rnf220Q6PDX6 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rnf220Q6PDX6 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Rnf220Q6PDX6 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC21.92■■□□□ 1.1
Rnf220Q6PDX6 Gm24804-201ENSMUST00000174982 85 ntBASIC21.92■■□□□ 1.1
Rnf220Q6PDX6 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.92■■□□□ 1.1
Rnf220Q6PDX6 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
Rnf220Q6PDX6 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
Rnf220Q6PDX6 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Rnf220Q6PDX6 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Rnf220Q6PDX6 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.1
Rnf220Q6PDX6 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms