Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Limch1Q3UH68 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC27.75■■■□□ 2.03
Limch1Q3UH68 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
Limch1Q3UH68 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC27.72■■■□□ 2.03
Limch1Q3UH68 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
Limch1Q3UH68 Gm7432-201ENSMUST00000210343 879 ntBASIC27.72■■■□□ 2.03
Limch1Q3UH68 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
Limch1Q3UH68 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Limch1Q3UH68 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
Limch1Q3UH68 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
Limch1Q3UH68 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Limch1Q3UH68 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
Limch1Q3UH68 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
Limch1Q3UH68 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC27.69■■■□□ 2.02
Limch1Q3UH68 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Limch1Q3UH68 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Limch1Q3UH68 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC27.68■■■□□ 2.02
Limch1Q3UH68 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC27.68■■■□□ 2.02
Limch1Q3UH68 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Limch1Q3UH68 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
Limch1Q3UH68 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC27.67■■■□□ 2.02
Limch1Q3UH68 AC153890.1-201ENSMUST00000220021 2469 ntBASIC27.66■■■□□ 2.02
Limch1Q3UH68 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
Limch1Q3UH68 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC27.65■■■□□ 2.02
Limch1Q3UH68 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Limch1Q3UH68 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
Limch1Q3UH68 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Limch1Q3UH68 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
Limch1Q3UH68 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
Limch1Q3UH68 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC27.64■■■□□ 2.02
Limch1Q3UH68 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Limch1Q3UH68 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Limch1Q3UH68 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Limch1Q3UH68 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
Limch1Q3UH68 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC27.6■■■□□ 2.01
Limch1Q3UH68 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC27.6■■■□□ 2.01
Limch1Q3UH68 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Limch1Q3UH68 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Limch1Q3UH68 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Limch1Q3UH68 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC27.59■■■□□ 2.01
Limch1Q3UH68 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC27.59■■■□□ 2.01
Limch1Q3UH68 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Limch1Q3UH68 Gm30023-201ENSMUST00000197970 889 ntBASIC27.58■■■□□ 2.01
Limch1Q3UH68 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
Limch1Q3UH68 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC27.58■■■□□ 2.01
Limch1Q3UH68 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC27.58■■■□□ 2.01
Limch1Q3UH68 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC27.57■■■□□ 2
Limch1Q3UH68 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC27.57■■■□□ 2
Limch1Q3UH68 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
Limch1Q3UH68 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC27.56■■■□□ 2
Limch1Q3UH68 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
Limch1Q3UH68 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC27.56■■■□□ 2
Limch1Q3UH68 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC27.56■■■□□ 2
Limch1Q3UH68 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC27.56■■■□□ 2
Limch1Q3UH68 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC27.55■■■□□ 2
Limch1Q3UH68 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
Limch1Q3UH68 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Limch1Q3UH68 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Limch1Q3UH68 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
Limch1Q3UH68 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC27.52■■■□□ 2
Limch1Q3UH68 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC27.52■■■□□ 2
Limch1Q3UH68 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Limch1Q3UH68 Gm11599-201ENSMUST00000118720 878 ntBASIC27.51■■□□□ 1.99
Limch1Q3UH68 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC27.51■■□□□ 1.99
Limch1Q3UH68 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
Limch1Q3UH68 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
Limch1Q3UH68 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Limch1Q3UH68 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC27.49■■□□□ 1.99
Limch1Q3UH68 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Limch1Q3UH68 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Limch1Q3UH68 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Limch1Q3UH68 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC27.48■■□□□ 1.99
Limch1Q3UH68 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
Limch1Q3UH68 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Limch1Q3UH68 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Limch1Q3UH68 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Limch1Q3UH68 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC27.47■■□□□ 1.99
Limch1Q3UH68 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC27.46■■□□□ 1.99
Limch1Q3UH68 AC122428.3-201ENSMUST00000215551 2290 ntBASIC27.46■■□□□ 1.99
Limch1Q3UH68 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC27.45■■□□□ 1.98
Limch1Q3UH68 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Limch1Q3UH68 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
Limch1Q3UH68 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
Limch1Q3UH68 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Limch1Q3UH68 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC27.44■■□□□ 1.98
Limch1Q3UH68 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC27.43■■□□□ 1.98
Limch1Q3UH68 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC27.43■■□□□ 1.98
Limch1Q3UH68 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Limch1Q3UH68 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
Limch1Q3UH68 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC27.42■■□□□ 1.98
Limch1Q3UH68 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Limch1Q3UH68 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC27.41■■□□□ 1.98
Limch1Q3UH68 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC27.41■■□□□ 1.98
Limch1Q3UH68 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
Limch1Q3UH68 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
Limch1Q3UH68 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC27.38■■□□□ 1.97
Limch1Q3UH68 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
Limch1Q3UH68 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Limch1Q3UH68 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC27.36■■□□□ 1.97
Limch1Q3UH68 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms