Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC31.12■■■□□ 2.57
Ddb1Q3U1J4 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Ddb1Q3U1J4 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
Ddb1Q3U1J4 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Ddb1Q3U1J4 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Ddb1Q3U1J4 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Ddb1Q3U1J4 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC31.08■■■□□ 2.57
Ddb1Q3U1J4 Gm45364-201ENSMUST00000210883 159 ntBASIC31.08■■■□□ 2.57
Ddb1Q3U1J4 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Ddb1Q3U1J4 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Ddb1Q3U1J4 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Ddb1Q3U1J4 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Ddb1Q3U1J4 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Ddb1Q3U1J4 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Ddb1Q3U1J4 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Ddb1Q3U1J4 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
Ddb1Q3U1J4 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC31.03■■■□□ 2.56
Ddb1Q3U1J4 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
Ddb1Q3U1J4 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Ddb1Q3U1J4 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Ddb1Q3U1J4 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC31.01■■■□□ 2.55
Ddb1Q3U1J4 Gm15039-201ENSMUST00000118914 875 ntBASIC31■■■□□ 2.55
Ddb1Q3U1J4 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC31■■■□□ 2.55
Ddb1Q3U1J4 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Ddb1Q3U1J4 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Ddb1Q3U1J4 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Ddb1Q3U1J4 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Ddb1Q3U1J4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Ddb1Q3U1J4 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Ddb1Q3U1J4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ddb1Q3U1J4 Gm14523-201ENSMUST00000117260 558 ntBASIC30.92■■■□□ 2.54
Ddb1Q3U1J4 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC30.92■■■□□ 2.54
Ddb1Q3U1J4 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Ddb1Q3U1J4 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Ddb1Q3U1J4 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC30.91■■■□□ 2.54
Ddb1Q3U1J4 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Ddb1Q3U1J4 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Ddb1Q3U1J4 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
Ddb1Q3U1J4 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ddb1Q3U1J4 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Ddb1Q3U1J4 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Ddb1Q3U1J4 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC30.87■■■□□ 2.53
Ddb1Q3U1J4 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC30.86■■■□□ 2.53
Ddb1Q3U1J4 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.86■■■□□ 2.53
Ddb1Q3U1J4 Gm37136-201ENSMUST00000194368 194 ntBASIC30.86■■■□□ 2.53
Ddb1Q3U1J4 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC30.86■■■□□ 2.53
Ddb1Q3U1J4 Gm13889-201ENSMUST00000099689 1386 ntBASIC30.85■■■□□ 2.53
Ddb1Q3U1J4 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Ddb1Q3U1J4 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Ddb1Q3U1J4 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ddb1Q3U1J4 Gm12818-201ENSMUST00000117562 1349 ntBASIC30.83■■■□□ 2.53
Ddb1Q3U1J4 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ddb1Q3U1J4 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ddb1Q3U1J4 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ddb1Q3U1J4 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC30.81■■■□□ 2.52
Ddb1Q3U1J4 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC30.8■■■□□ 2.52
Ddb1Q3U1J4 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Ddb1Q3U1J4 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Ddb1Q3U1J4 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC30.79■■■□□ 2.52
Ddb1Q3U1J4 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Ddb1Q3U1J4 Gm22567-201ENSMUST00000175542 342 ntBASIC30.79■■■□□ 2.52
Ddb1Q3U1J4 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.78■■■□□ 2.52
Ddb1Q3U1J4 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Ddb1Q3U1J4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC30.77■■■□□ 2.52
Ddb1Q3U1J4 Gm5067-201ENSMUST00000170449 1009 ntBASIC30.77■■■□□ 2.52
Ddb1Q3U1J4 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Ddb1Q3U1J4 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
Ddb1Q3U1J4 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC30.76■■■□□ 2.51
Ddb1Q3U1J4 Gm5812-201ENSMUST00000061073 957 ntBASIC30.76■■■□□ 2.51
Ddb1Q3U1J4 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Ddb1Q3U1J4 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
Ddb1Q3U1J4 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
Ddb1Q3U1J4 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Ddb1Q3U1J4 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Ddb1Q3U1J4 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Ddb1Q3U1J4 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC30.73■■■□□ 2.51
Ddb1Q3U1J4 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Ddb1Q3U1J4 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Ddb1Q3U1J4 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Ddb1Q3U1J4 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
Ddb1Q3U1J4 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
Ddb1Q3U1J4 Gm9905-201ENSMUST00000065740 1845 ntBASIC30.72■■■□□ 2.51
Ddb1Q3U1J4 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Ddb1Q3U1J4 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Ddb1Q3U1J4 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Ddb1Q3U1J4 Gm9910-201ENSMUST00000195385 1550 ntBASIC30.68■■■□□ 2.5
Ddb1Q3U1J4 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Ddb1Q3U1J4 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Ddb1Q3U1J4 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC30.67■■■□□ 2.5
Ddb1Q3U1J4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Ddb1Q3U1J4 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ddb1Q3U1J4 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ddb1Q3U1J4 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
Ddb1Q3U1J4 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
Ddb1Q3U1J4 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC30.66■■■□□ 2.5
Ddb1Q3U1J4 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Ddb1Q3U1J4 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ddb1Q3U1J4 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC30.65■■■□□ 2.5
Ddb1Q3U1J4 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Ddb1Q3U1J4 AC151971.4-201ENSMUST00000214717 704 ntBASIC30.63■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 59.7 ms