Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 PAU5YFL020C 369 nt9.03□□□□□ -0.96
MSH3P25336 PGC1YPL206C 966 nt9.03□□□□□ -0.96
MSH3P25336 SDS24YBR214W 1584 nt9.03□□□□□ -0.96
MSH3P25336 NDE1YMR145C 1683 nt9.02□□□□□ -0.97
MSH3P25336 YKR012CYKR012C 378 nt9.02□□□□□ -0.97
MSH3P25336 AIM34YMR003W 597 nt9.02□□□□□ -0.97
MSH3P25336 AFG2YLR397C 2343 nt9.02□□□□□ -0.97
MSH3P25336 VBA3YCL069W 1377 nt9.01□□□□□ -0.97
MSH3P25336 FHN1YGR131W 525 nt9.01□□□□□ -0.97
MSH3P25336 STP3YLR375W 1032 nt9.01□□□□□ -0.97
MSH3P25336 REC114YMR133W 1287 nt9.01□□□□□ -0.97
MSH3P25336 TMS1YDR105C 1422 nt9□□□□□ -0.97
MSH3P25336 SRM1YGL097W 1449 nt9□□□□□ -0.97
MSH3P25336 ADE16YLR028C 1776 nt9□□□□□ -0.97
MSH3P25336 IGD1YFR017C 588 nt9□□□□□ -0.97
MSH3P25336 PHB2YGR231C 933 nt9□□□□□ -0.97
MSH3P25336 snR4snR4 186 nt9□□□□□ -0.97
MSH3P25336 PAR32YDL173W 888 nt8.98□□□□□ -0.97
MSH3P25336 snR86snR86 1004 nt8.98□□□□□ -0.97
MSH3P25336 ADH3YMR083W 1128 nt8.98□□□□□ -0.97
MSH3P25336 ORT1YOR130C 879 nt8.98□□□□□ -0.97
MSH3P25336 YIL177CYIL177C 5277 nt8.97□□□□□ -0.97
MSH3P25336 GGC1YDL198C 903 nt8.96□□□□□ -0.98
MSH3P25336 YMR210WYMR210W 1350 nt8.96□□□□□ -0.98
MSH3P25336 PFS2YNL317W 1398 nt8.96□□□□□ -0.98
MSH3P25336 ATG17YLR423C 1254 nt8.95□□□□□ -0.98
MSH3P25336 YBR232CYBR232C 360 nt8.95□□□□□ -0.98
MSH3P25336 CCR4YAL021C 2514 nt8.94□□□□□ -0.98
MSH3P25336 TOP3YLR234W 1971 nt8.94□□□□□ -0.98
MSH3P25336 LYS20YDL182W 1287 nt8.93□□□□□ -0.98
MSH3P25336 YFR020WYFR020W 699 nt8.93□□□□□ -0.98
MSH3P25336 YPL071CYPL071C 471 nt8.93□□□□□ -0.98
MSH3P25336 LEA1YPL213W 717 nt8.93□□□□□ -0.98
MSH3P25336 CTF3YLR381W 2202 nt8.92□□□□□ -0.98
MSH3P25336 ITR1YDR497C 1755 nt8.92□□□□□ -0.98
MSH3P25336 HSV2YGR223C 1347 nt8.92□□□□□ -0.98
MSH3P25336 KDX1YKL161C 1302 nt8.92□□□□□ -0.98
MSH3P25336 BEM1YBR200W 1656 nt8.91□□□□□ -0.98
MSH3P25336 YBR056WYBR056W 1506 nt8.91□□□□□ -0.98
MSH3P25336 RSM7YJR113C 744 nt8.91□□□□□ -0.98
MSH3P25336 ABP1YCR088W 1779 nt8.91□□□□□ -0.98
MSH3P25336 ENO1YGR254W 1314 nt8.9□□□□□ -0.98
MSH3P25336 tA(AGC)DtA(AGC)D 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)FtA(AGC)F 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)GtA(AGC)G 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)HtA(AGC)H 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)JtA(AGC)J 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)K1tA(AGC)K1 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)K2tA(AGC)K2 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)LtA(AGC)L 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)M1tA(AGC)M1 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)M2tA(AGC)M2 73 nt8.89□□□□□ -0.99
MSH3P25336 tA(AGC)PtA(AGC)P 73 nt8.89□□□□□ -0.99
MSH3P25336 MOB1YIL106W 945 nt8.89□□□□□ -0.99
MSH3P25336 YIR035CYIR035C 765 nt8.89□□□□□ -0.99
MSH3P25336 SEN2YLR105C 1134 nt8.89□□□□□ -0.99
MSH3P25336 CHA1YCL064C 1083 nt8.88□□□□□ -0.99
MSH3P25336 NAP1YKR048C 1254 nt8.88□□□□□ -0.99
MSH3P25336 FLX1YIL134W 936 nt8.87□□□□□ -0.99
MSH3P25336 YJL009WYJL009W 327 nt8.87□□□□□ -0.99
MSH3P25336 MAM3YOL060C 2121 nt8.86□□□□□ -0.99
MSH3P25336 YIL108WYIL108W 2091 nt8.86□□□□□ -0.99
MSH3P25336 YJR149WYJR149W 1215 nt8.86□□□□□ -0.99
MSH3P25336 HIS3YOR202W 663 nt8.86□□□□□ -0.99
MSH3P25336 IPL1YPL209C 1104 nt8.86□□□□□ -0.99
MSH3P25336 UTP6YDR449C 1323 nt8.85□□□□□ -0.99
MSH3P25336 MEP1YGR121C 1479 nt8.85□□□□□ -0.99
MSH3P25336 BUB2YMR055C 921 nt8.85□□□□□ -0.99
MSH3P25336 PRC1YMR297W 1599 nt8.85□□□□□ -0.99
MSH3P25336 ARP10YDR106W 855 nt8.81□□□□□ -1
MSH3P25336 ADE2YOR128C 1716 nt8.8□□□□□ -1
MSH3P25336 CYC3YAL039C 810 nt8.8□□□□□ -1
MSH3P25336 SRP102YKL154W 735 nt8.8□□□□□ -1
MSH3P25336 RNA170RNA170 169 nt8.8□□□□□ -1
MSH3P25336 SLM3YDL033C 1254 nt8.79□□□□□ -1
MSH3P25336 YLR280CYLR280C 351 nt8.78□□□□□ -1
MSH3P25336 MET22YOL064C 1074 nt8.78□□□□□ -1
MSH3P25336 YRF1-1YDR545W 5391 nt8.78□□□□□ -1
MSH3P25336 YRF1-5YLR467W 5391 nt8.78□□□□□ -1
MSH3P25336 YRF1-8YOR396W 5391 nt8.78□□□□□ -1
MSH3P25336 YDR306CYDR306C 1437 nt8.78□□□□□ -1
MSH3P25336 DIA4YHR011W 1341 nt8.78□□□□□ -1
MSH3P25336 YLR460CYLR460C 1131 nt8.77□□□□□ -1.01
MSH3P25336 ATO2YNR002C 849 nt8.77□□□□□ -1.01
MSH3P25336 MDH2YOL126C 1134 nt8.77□□□□□ -1.01
MSH3P25336 PUS7YOR243C 2031 nt8.76□□□□□ -1.01
MSH3P25336 EHT1YBR177C 1356 nt8.75□□□□□ -1.01
MSH3P25336 BUD31YCR063W 474 nt8.75□□□□□ -1.01
MSH3P25336 ATP10YLR393W 840 nt8.75□□□□□ -1.01
MSH3P25336 ERO1YML130C 1692 nt8.75□□□□□ -1.01
MSH3P25336 LRO1YNR008W 1986 nt8.74□□□□□ -1.01
MSH3P25336 GLY1YEL046C 1164 nt8.74□□□□□ -1.01
MSH3P25336 CHS7YHR142W 951 nt8.74□□□□□ -1.01
MSH3P25336 YJL064WYJL064W 396 nt8.74□□□□□ -1.01
MSH3P25336 TIF3YPR163C 1311 nt8.74□□□□□ -1.01
MSH3P25336 MRN1YPL184C 1839 nt8.73□□□□□ -1.01
MSH3P25336 DIP5YPL265W 1827 nt8.73□□□□□ -1.01
MSH3P25336 INO1YJL153C 1602 nt8.73□□□□□ -1.01
MSH3P25336 PDC6YGR087C 1692 nt8.73□□□□□ -1.01
MSH3P25336 SEM1YDR363W-A 270 nt8.73□□□□□ -1.01
Retrieved 100 of 7,029 protein–RNA pairs in 51.5 ms