Protein–RNA interactions for Protein: P04441

Cd74, H-2 class II histocompatibility antigen gamma chain, mousemouse

Predictions only

Length 279 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd74P04441 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Cd74P04441 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Cd74P04441 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC19.52■□□□□ 0.72
Cd74P04441 Gm7432-201ENSMUST00000210343 879 ntBASIC19.52■□□□□ 0.72
Cd74P04441 Gm6345-201ENSMUST00000180378 1691 ntBASIC19.52■□□□□ 0.71
Cd74P04441 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cd74P04441 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cd74P04441 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC19.51■□□□□ 0.71
Cd74P04441 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Cd74P04441 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Cd74P04441 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Cd74P04441 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Cd74P04441 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd74P04441 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd74P04441 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Cd74P04441 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd74P04441 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd74P04441 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Cd74P04441 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cd74P04441 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Cd74P04441 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cd74P04441 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.49■□□□□ 0.71
Cd74P04441 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cd74P04441 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cd74P04441 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Cd74P04441 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Cd74P04441 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC19.47■□□□□ 0.71
Cd74P04441 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cd74P04441 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cd74P04441 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cd74P04441 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Cd74P04441 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Cd74P04441 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Cd74P04441 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cd74P04441 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cd74P04441 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
Cd74P04441 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cd74P04441 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cd74P04441 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cd74P04441 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Cd74P04441 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
Cd74P04441 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cd74P04441 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cd74P04441 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cd74P04441 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cd74P04441 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cd74P04441 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cd74P04441 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cd74P04441 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cd74P04441 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cd74P04441 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cd74P04441 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Cd74P04441 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cd74P04441 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC19.41■□□□□ 0.7
Cd74P04441 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cd74P04441 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cd74P04441 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cd74P04441 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cd74P04441 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cd74P04441 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cd74P04441 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cd74P04441 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC19.39■□□□□ 0.69
Cd74P04441 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cd74P04441 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cd74P04441 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cd74P04441 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Cd74P04441 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cd74P04441 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
Cd74P04441 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC19.37■□□□□ 0.69
Cd74P04441 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cd74P04441 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cd74P04441 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Cd74P04441 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cd74P04441 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cd74P04441 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cd74P04441 Gm11599-201ENSMUST00000118720 878 ntBASIC19.35■□□□□ 0.69
Cd74P04441 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cd74P04441 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cd74P04441 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cd74P04441 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cd74P04441 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cd74P04441 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Cd74P04441 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC19.34■□□□□ 0.69
Cd74P04441 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cd74P04441 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Cd74P04441 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cd74P04441 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cd74P04441 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cd74P04441 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC19.33■□□□□ 0.69
Cd74P04441 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC19.33■□□□□ 0.69
Cd74P04441 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cd74P04441 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Cd74P04441 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC19.32■□□□□ 0.68
Cd74P04441 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cd74P04441 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Cd74P04441 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC19.3■□□□□ 0.68
Cd74P04441 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Cd74P04441 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cd74P04441 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cd74P04441 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms