Protein–RNA interactions for Protein: A0A0G2JG01

Trav13n-4, T cell receptor alpha variable 13N-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13n-4A0A0G2JG01 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav13n-4A0A0G2JG01 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav13n-4A0A0G2JG01 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
Trav13n-4A0A0G2JG01 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav13n-4A0A0G2JG01 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav13n-4A0A0G2JG01 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav13n-4A0A0G2JG01 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav13n-4A0A0G2JG01 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav13n-4A0A0G2JG01 Gm7432-201ENSMUST00000210343 879 ntBASIC18.91■□□□□ 0.62
Trav13n-4A0A0G2JG01 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trav13n-4A0A0G2JG01 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trav13n-4A0A0G2JG01 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav13n-4A0A0G2JG01 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav13n-4A0A0G2JG01 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav13n-4A0A0G2JG01 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC18.9■□□□□ 0.62
Trav13n-4A0A0G2JG01 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav13n-4A0A0G2JG01 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trav13n-4A0A0G2JG01 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Trav13n-4A0A0G2JG01 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav13n-4A0A0G2JG01 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav13n-4A0A0G2JG01 Pcf11-205ENSMUST00000208255 1720 ntBASIC18.88■□□□□ 0.61
Trav13n-4A0A0G2JG01 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav13n-4A0A0G2JG01 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav13n-4A0A0G2JG01 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.86■□□□□ 0.61
Trav13n-4A0A0G2JG01 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
Trav13n-4A0A0G2JG01 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav13n-4A0A0G2JG01 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trav13n-4A0A0G2JG01 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav13n-4A0A0G2JG01 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trav13n-4A0A0G2JG01 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC18.85■□□□□ 0.61
Trav13n-4A0A0G2JG01 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC18.84■□□□□ 0.61
Trav13n-4A0A0G2JG01 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav13n-4A0A0G2JG01 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav13n-4A0A0G2JG01 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav13n-4A0A0G2JG01 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trav13n-4A0A0G2JG01 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trav13n-4A0A0G2JG01 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trav13n-4A0A0G2JG01 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trav13n-4A0A0G2JG01 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC18.82■□□□□ 0.6
Trav13n-4A0A0G2JG01 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
Trav13n-4A0A0G2JG01 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Trav13n-4A0A0G2JG01 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav13n-4A0A0G2JG01 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav13n-4A0A0G2JG01 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav13n-4A0A0G2JG01 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav13n-4A0A0G2JG01 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Trav13n-4A0A0G2JG01 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav13n-4A0A0G2JG01 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav13n-4A0A0G2JG01 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.79■□□□□ 0.6
Trav13n-4A0A0G2JG01 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trav13n-4A0A0G2JG01 Gm11599-201ENSMUST00000118720 878 ntBASIC18.77■□□□□ 0.6
Trav13n-4A0A0G2JG01 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trav13n-4A0A0G2JG01 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trav13n-4A0A0G2JG01 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trav13n-4A0A0G2JG01 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav13n-4A0A0G2JG01 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav13n-4A0A0G2JG01 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav13n-4A0A0G2JG01 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav13n-4A0A0G2JG01 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav13n-4A0A0G2JG01 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav13n-4A0A0G2JG01 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav13n-4A0A0G2JG01 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav13n-4A0A0G2JG01 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trav13n-4A0A0G2JG01 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav13n-4A0A0G2JG01 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Trav13n-4A0A0G2JG01 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav13n-4A0A0G2JG01 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav13n-4A0A0G2JG01 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC18.74■□□□□ 0.59
Trav13n-4A0A0G2JG01 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav13n-4A0A0G2JG01 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav13n-4A0A0G2JG01 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav13n-4A0A0G2JG01 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.73■□□□□ 0.59
Trav13n-4A0A0G2JG01 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Trav13n-4A0A0G2JG01 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav13n-4A0A0G2JG01 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC18.72■□□□□ 0.59
Trav13n-4A0A0G2JG01 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav13n-4A0A0G2JG01 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
Trav13n-4A0A0G2JG01 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Trav13n-4A0A0G2JG01 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trav13n-4A0A0G2JG01 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav13n-4A0A0G2JG01 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav13n-4A0A0G2JG01 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Trav13n-4A0A0G2JG01 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trav13n-4A0A0G2JG01 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav13n-4A0A0G2JG01 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav13n-4A0A0G2JG01 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.69■□□□□ 0.58
Trav13n-4A0A0G2JG01 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav13n-4A0A0G2JG01 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav13n-4A0A0G2JG01 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC18.68■□□□□ 0.58
Trav13n-4A0A0G2JG01 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC18.68■□□□□ 0.58
Trav13n-4A0A0G2JG01 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav13n-4A0A0G2JG01 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav13n-4A0A0G2JG01 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav13n-4A0A0G2JG01 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Trav13n-4A0A0G2JG01 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav13n-4A0A0G2JG01 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.66■□□□□ 0.58
Trav13n-4A0A0G2JG01 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav13n-4A0A0G2JG01 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav13n-4A0A0G2JG01 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav13n-4A0A0G2JG01 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 251.6 ms