Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Trbv20A0A0B4J1H5 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trbv20A0A0B4J1H5 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Trbv20A0A0B4J1H5 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trbv20A0A0B4J1H5 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trbv20A0A0B4J1H5 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trbv20A0A0B4J1H5 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
Trbv20A0A0B4J1H5 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trbv20A0A0B4J1H5 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.08■□□□□ 0.97
Trbv20A0A0B4J1H5 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
Trbv20A0A0B4J1H5 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC21.08■□□□□ 0.97
Trbv20A0A0B4J1H5 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Trbv20A0A0B4J1H5 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trbv20A0A0B4J1H5 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trbv20A0A0B4J1H5 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trbv20A0A0B4J1H5 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
Trbv20A0A0B4J1H5 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trbv20A0A0B4J1H5 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trbv20A0A0B4J1H5 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trbv20A0A0B4J1H5 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trbv20A0A0B4J1H5 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trbv20A0A0B4J1H5 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trbv20A0A0B4J1H5 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trbv20A0A0B4J1H5 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trbv20A0A0B4J1H5 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.05■□□□□ 0.96
Trbv20A0A0B4J1H5 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trbv20A0A0B4J1H5 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trbv20A0A0B4J1H5 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trbv20A0A0B4J1H5 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trbv20A0A0B4J1H5 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trbv20A0A0B4J1H5 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trbv20A0A0B4J1H5 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trbv20A0A0B4J1H5 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trbv20A0A0B4J1H5 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trbv20A0A0B4J1H5 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trbv20A0A0B4J1H5 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trbv20A0A0B4J1H5 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trbv20A0A0B4J1H5 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.01■□□□□ 0.95
Trbv20A0A0B4J1H5 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trbv20A0A0B4J1H5 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21■□□□□ 0.95
Trbv20A0A0B4J1H5 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Trbv20A0A0B4J1H5 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trbv20A0A0B4J1H5 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trbv20A0A0B4J1H5 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trbv20A0A0B4J1H5 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.99■□□□□ 0.95
Trbv20A0A0B4J1H5 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trbv20A0A0B4J1H5 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC20.98■□□□□ 0.95
Trbv20A0A0B4J1H5 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trbv20A0A0B4J1H5 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trbv20A0A0B4J1H5 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trbv20A0A0B4J1H5 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trbv20A0A0B4J1H5 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trbv20A0A0B4J1H5 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Trbv20A0A0B4J1H5 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Trbv20A0A0B4J1H5 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trbv20A0A0B4J1H5 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trbv20A0A0B4J1H5 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trbv20A0A0B4J1H5 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trbv20A0A0B4J1H5 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trbv20A0A0B4J1H5 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trbv20A0A0B4J1H5 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trbv20A0A0B4J1H5 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trbv20A0A0B4J1H5 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Trbv20A0A0B4J1H5 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trbv20A0A0B4J1H5 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trbv20A0A0B4J1H5 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trbv20A0A0B4J1H5 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Trbv20A0A0B4J1H5 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trbv20A0A0B4J1H5 Gm26115-201ENSMUST00000175605 87 ntBASIC20.92■□□□□ 0.94
Trbv20A0A0B4J1H5 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trbv20A0A0B4J1H5 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trbv20A0A0B4J1H5 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.91■□□□□ 0.94
Trbv20A0A0B4J1H5 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trbv20A0A0B4J1H5 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trbv20A0A0B4J1H5 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trbv20A0A0B4J1H5 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trbv20A0A0B4J1H5 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trbv20A0A0B4J1H5 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trbv20A0A0B4J1H5 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trbv20A0A0B4J1H5 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trbv20A0A0B4J1H5 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Trbv20A0A0B4J1H5 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trbv20A0A0B4J1H5 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trbv20A0A0B4J1H5 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trbv20A0A0B4J1H5 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trbv20A0A0B4J1H5 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trbv20A0A0B4J1H5 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trbv20A0A0B4J1H5 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trbv20A0A0B4J1H5 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trbv20A0A0B4J1H5 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trbv20A0A0B4J1H5 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trbv20A0A0B4J1H5 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trbv20A0A0B4J1H5 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trbv20A0A0B4J1H5 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trbv20A0A0B4J1H5 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC20.86■□□□□ 0.93
Trbv20A0A0B4J1H5 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trbv20A0A0B4J1H5 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.86■□□□□ 0.93
Trbv20A0A0B4J1H5 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trbv20A0A0B4J1H5 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trbv20A0A0B4J1H5 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms