Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv5A0A0B4J1G9 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv5A0A0B4J1G9 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trbv5A0A0B4J1G9 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv5A0A0B4J1G9 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.86■□□□□ 0.61
Trbv5A0A0B4J1G9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv5A0A0B4J1G9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trbv5A0A0B4J1G9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv5A0A0B4J1G9 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv5A0A0B4J1G9 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Trbv5A0A0B4J1G9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv5A0A0B4J1G9 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv5A0A0B4J1G9 Peli2-204ENSMUST00000226513 1320 ntBASIC18.84■□□□□ 0.61
Trbv5A0A0B4J1G9 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv5A0A0B4J1G9 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv5A0A0B4J1G9 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv5A0A0B4J1G9 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trbv5A0A0B4J1G9 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trbv5A0A0B4J1G9 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trbv5A0A0B4J1G9 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
Trbv5A0A0B4J1G9 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv5A0A0B4J1G9 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv5A0A0B4J1G9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv5A0A0B4J1G9 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv5A0A0B4J1G9 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Trbv5A0A0B4J1G9 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Trbv5A0A0B4J1G9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Trbv5A0A0B4J1G9 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Trbv5A0A0B4J1G9 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv5A0A0B4J1G9 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv5A0A0B4J1G9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv5A0A0B4J1G9 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trbv5A0A0B4J1G9 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trbv5A0A0B4J1G9 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.8■□□□□ 0.6
Trbv5A0A0B4J1G9 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trbv5A0A0B4J1G9 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.8■□□□□ 0.6
Trbv5A0A0B4J1G9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC18.79■□□□□ 0.6
Trbv5A0A0B4J1G9 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trbv5A0A0B4J1G9 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.78■□□□□ 0.6
Trbv5A0A0B4J1G9 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trbv5A0A0B4J1G9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trbv5A0A0B4J1G9 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv5A0A0B4J1G9 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv5A0A0B4J1G9 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv5A0A0B4J1G9 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv5A0A0B4J1G9 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv5A0A0B4J1G9 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv5A0A0B4J1G9 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
Trbv5A0A0B4J1G9 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Trbv5A0A0B4J1G9 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv5A0A0B4J1G9 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv5A0A0B4J1G9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv5A0A0B4J1G9 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv5A0A0B4J1G9 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv5A0A0B4J1G9 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv5A0A0B4J1G9 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.74■□□□□ 0.59
Trbv5A0A0B4J1G9 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv5A0A0B4J1G9 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trbv5A0A0B4J1G9 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv5A0A0B4J1G9 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv5A0A0B4J1G9 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv5A0A0B4J1G9 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv5A0A0B4J1G9 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Trbv5A0A0B4J1G9 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv5A0A0B4J1G9 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv5A0A0B4J1G9 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv5A0A0B4J1G9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
Trbv5A0A0B4J1G9 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trbv5A0A0B4J1G9 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
Trbv5A0A0B4J1G9 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trbv5A0A0B4J1G9 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv5A0A0B4J1G9 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.7■□□□□ 0.58
Trbv5A0A0B4J1G9 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
Trbv5A0A0B4J1G9 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv5A0A0B4J1G9 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv5A0A0B4J1G9 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.7■□□□□ 0.58
Trbv5A0A0B4J1G9 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.7■□□□□ 0.58
Trbv5A0A0B4J1G9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trbv5A0A0B4J1G9 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
Trbv5A0A0B4J1G9 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv5A0A0B4J1G9 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv5A0A0B4J1G9 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv5A0A0B4J1G9 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms