Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv1A0A0B4J1G7 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Trbv1A0A0B4J1G7 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv1A0A0B4J1G7 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Trbv1A0A0B4J1G7 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trbv1A0A0B4J1G7 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv1A0A0B4J1G7 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv1A0A0B4J1G7 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv1A0A0B4J1G7 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.31■□□□□ 0.52
Trbv1A0A0B4J1G7 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv1A0A0B4J1G7 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv1A0A0B4J1G7 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Trbv1A0A0B4J1G7 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Trbv1A0A0B4J1G7 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv1A0A0B4J1G7 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trbv1A0A0B4J1G7 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv1A0A0B4J1G7 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv1A0A0B4J1G7 AC122428.3-201ENSMUST00000215551 2290 ntBASIC18.28■□□□□ 0.52
Trbv1A0A0B4J1G7 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC18.28■□□□□ 0.52
Trbv1A0A0B4J1G7 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trbv1A0A0B4J1G7 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv1A0A0B4J1G7 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv1A0A0B4J1G7 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Trbv1A0A0B4J1G7 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Trbv1A0A0B4J1G7 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv1A0A0B4J1G7 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC18.26■□□□□ 0.51
Trbv1A0A0B4J1G7 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv1A0A0B4J1G7 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv1A0A0B4J1G7 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv1A0A0B4J1G7 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv1A0A0B4J1G7 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv1A0A0B4J1G7 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv1A0A0B4J1G7 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv1A0A0B4J1G7 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv1A0A0B4J1G7 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Trbv1A0A0B4J1G7 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv1A0A0B4J1G7 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
Trbv1A0A0B4J1G7 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC18.23■□□□□ 0.51
Trbv1A0A0B4J1G7 Tdp2-203ENSMUST00000223804 1136 ntBASIC18.23■□□□□ 0.51
Trbv1A0A0B4J1G7 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv1A0A0B4J1G7 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv1A0A0B4J1G7 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv1A0A0B4J1G7 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv1A0A0B4J1G7 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Trbv1A0A0B4J1G7 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Trbv1A0A0B4J1G7 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.22■□□□□ 0.51
Trbv1A0A0B4J1G7 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv1A0A0B4J1G7 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv1A0A0B4J1G7 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv1A0A0B4J1G7 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Trbv1A0A0B4J1G7 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.21■□□□□ 0.51
Trbv1A0A0B4J1G7 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
Trbv1A0A0B4J1G7 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv1A0A0B4J1G7 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Trbv1A0A0B4J1G7 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trbv1A0A0B4J1G7 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv1A0A0B4J1G7 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv1A0A0B4J1G7 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.2■□□□□ 0.5
Trbv1A0A0B4J1G7 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv1A0A0B4J1G7 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trbv1A0A0B4J1G7 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Trbv1A0A0B4J1G7 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trbv1A0A0B4J1G7 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv1A0A0B4J1G7 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv1A0A0B4J1G7 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Trbv1A0A0B4J1G7 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv1A0A0B4J1G7 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv1A0A0B4J1G7 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv1A0A0B4J1G7 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trbv1A0A0B4J1G7 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv1A0A0B4J1G7 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC18.17■□□□□ 0.5
Trbv1A0A0B4J1G7 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv1A0A0B4J1G7 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv1A0A0B4J1G7 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv1A0A0B4J1G7 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trbv1A0A0B4J1G7 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Trbv1A0A0B4J1G7 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.17■□□□□ 0.5
Trbv1A0A0B4J1G7 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Trbv1A0A0B4J1G7 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Trbv1A0A0B4J1G7 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trbv1A0A0B4J1G7 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trbv1A0A0B4J1G7 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trbv1A0A0B4J1G7 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trbv1A0A0B4J1G7 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trbv1A0A0B4J1G7 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trbv1A0A0B4J1G7 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.15■□□□□ 0.5
Trbv1A0A0B4J1G7 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trbv1A0A0B4J1G7 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trbv1A0A0B4J1G7 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trbv1A0A0B4J1G7 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trbv1A0A0B4J1G7 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trbv1A0A0B4J1G7 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC18.14■□□□□ 0.49
Trbv1A0A0B4J1G7 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trbv1A0A0B4J1G7 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC18.14■□□□□ 0.49
Trbv1A0A0B4J1G7 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.13■□□□□ 0.49
Trbv1A0A0B4J1G7 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trbv1A0A0B4J1G7 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trbv1A0A0B4J1G7 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
Trbv1A0A0B4J1G7 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trbv1A0A0B4J1G7 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms