Protein–RNA interactions for Protein: A0A075B621

Trav6n-5, T cell receptor alpha variable 6N-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6n-5A0A075B621 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6n-5A0A075B621 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6n-5A0A075B621 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6n-5A0A075B621 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav6n-5A0A075B621 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav6n-5A0A075B621 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav6n-5A0A075B621 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
Trav6n-5A0A075B621 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav6n-5A0A075B621 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav6n-5A0A075B621 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trav6n-5A0A075B621 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6n-5A0A075B621 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6n-5A0A075B621 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav6n-5A0A075B621 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6n-5A0A075B621 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6n-5A0A075B621 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6n-5A0A075B621 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6n-5A0A075B621 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6n-5A0A075B621 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trav6n-5A0A075B621 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6n-5A0A075B621 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6n-5A0A075B621 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6n-5A0A075B621 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trav6n-5A0A075B621 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6n-5A0A075B621 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6n-5A0A075B621 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.21■□□□□ 0.51
Trav6n-5A0A075B621 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Trav6n-5A0A075B621 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6n-5A0A075B621 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trav6n-5A0A075B621 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6n-5A0A075B621 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6n-5A0A075B621 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trav6n-5A0A075B621 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.2■□□□□ 0.5
Trav6n-5A0A075B621 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6n-5A0A075B621 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6n-5A0A075B621 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6n-5A0A075B621 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trav6n-5A0A075B621 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6n-5A0A075B621 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6n-5A0A075B621 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trav6n-5A0A075B621 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trav6n-5A0A075B621 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Trav6n-5A0A075B621 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trav6n-5A0A075B621 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6n-5A0A075B621 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6n-5A0A075B621 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trav6n-5A0A075B621 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.16■□□□□ 0.5
Trav6n-5A0A075B621 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.16■□□□□ 0.5
Trav6n-5A0A075B621 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC18.15■□□□□ 0.5
Trav6n-5A0A075B621 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trav6n-5A0A075B621 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6n-5A0A075B621 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
Trav6n-5A0A075B621 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trav6n-5A0A075B621 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6n-5A0A075B621 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6n-5A0A075B621 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6n-5A0A075B621 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6n-5A0A075B621 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6n-5A0A075B621 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Trav6n-5A0A075B621 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6n-5A0A075B621 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6n-5A0A075B621 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6n-5A0A075B621 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trav6n-5A0A075B621 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6n-5A0A075B621 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6n-5A0A075B621 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6n-5A0A075B621 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6n-5A0A075B621 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6n-5A0A075B621 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6n-5A0A075B621 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6n-5A0A075B621 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6n-5A0A075B621 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6n-5A0A075B621 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6n-5A0A075B621 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6n-5A0A075B621 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6n-5A0A075B621 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6n-5A0A075B621 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Trav6n-5A0A075B621 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6n-5A0A075B621 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Trav6n-5A0A075B621 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6n-5A0A075B621 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6n-5A0A075B621 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.07■□□□□ 0.48
Trav6n-5A0A075B621 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Trav6n-5A0A075B621 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6n-5A0A075B621 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6n-5A0A075B621 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6n-5A0A075B621 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6n-5A0A075B621 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav6n-5A0A075B621 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav6n-5A0A075B621 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav6n-5A0A075B621 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms