Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Trav1A0A075B5Z4 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Trav1A0A075B5Z4 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Trav1A0A075B5Z4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Trav1A0A075B5Z4 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Trav1A0A075B5Z4 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.04■■□□□ 1.12
Trav1A0A075B5Z4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Trav1A0A075B5Z4 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trav1A0A075B5Z4 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Trav1A0A075B5Z4 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav1A0A075B5Z4 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav1A0A075B5Z4 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Trav1A0A075B5Z4 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav1A0A075B5Z4 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav1A0A075B5Z4 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trav1A0A075B5Z4 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Trav1A0A075B5Z4 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav1A0A075B5Z4 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trav1A0A075B5Z4 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Trav1A0A075B5Z4 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Trav1A0A075B5Z4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC22.01■■□□□ 1.11
Trav1A0A075B5Z4 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trav1A0A075B5Z4 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trav1A0A075B5Z4 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trav1A0A075B5Z4 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Trav1A0A075B5Z4 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav1A0A075B5Z4 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav1A0A075B5Z4 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trav1A0A075B5Z4 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.99■■□□□ 1.11
Trav1A0A075B5Z4 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trav1A0A075B5Z4 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Trav1A0A075B5Z4 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trav1A0A075B5Z4 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trav1A0A075B5Z4 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trav1A0A075B5Z4 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trav1A0A075B5Z4 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trav1A0A075B5Z4 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trav1A0A075B5Z4 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
Trav1A0A075B5Z4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Trav1A0A075B5Z4 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.96■■□□□ 1.11
Trav1A0A075B5Z4 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.96■■□□□ 1.11
Trav1A0A075B5Z4 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Trav1A0A075B5Z4 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Trav1A0A075B5Z4 Particl-201ENSMUST00000205370 1560 ntBASIC21.93■■□□□ 1.1
Trav1A0A075B5Z4 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trav1A0A075B5Z4 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav1A0A075B5Z4 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav1A0A075B5Z4 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav1A0A075B5Z4 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC21.92■■□□□ 1.1
Trav1A0A075B5Z4 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav1A0A075B5Z4 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav1A0A075B5Z4 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav1A0A075B5Z4 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav1A0A075B5Z4 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav1A0A075B5Z4 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Trav1A0A075B5Z4 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Trav1A0A075B5Z4 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trav1A0A075B5Z4 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trav1A0A075B5Z4 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trav1A0A075B5Z4 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Trav1A0A075B5Z4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Trav1A0A075B5Z4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.88■■□□□ 1.09
Trav1A0A075B5Z4 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
Trav1A0A075B5Z4 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav1A0A075B5Z4 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav1A0A075B5Z4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav1A0A075B5Z4 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
Trav1A0A075B5Z4 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav1A0A075B5Z4 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav1A0A075B5Z4 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav1A0A075B5Z4 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trav1A0A075B5Z4 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC21.84■■□□□ 1.09
Trav1A0A075B5Z4 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Trav1A0A075B5Z4 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
Trav1A0A075B5Z4 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav1A0A075B5Z4 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Trav1A0A075B5Z4 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trav1A0A075B5Z4 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trav1A0A075B5Z4 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trav1A0A075B5Z4 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trav1A0A075B5Z4 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trav1A0A075B5Z4 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
Trav1A0A075B5Z4 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trav1A0A075B5Z4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav1A0A075B5Z4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trav1A0A075B5Z4 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Trav1A0A075B5Z4 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trav1A0A075B5Z4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav1A0A075B5Z4 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Trav1A0A075B5Z4 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Trav1A0A075B5Z4 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav1A0A075B5Z4 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trav1A0A075B5Z4 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Trav1A0A075B5Z4 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Trav1A0A075B5Z4 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trav1A0A075B5Z4 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trav1A0A075B5Z4 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trav1A0A075B5Z4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trav1A0A075B5Z4 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trav1A0A075B5Z4 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms