Protein–RNA interactions for Protein: P38319

TDP1, Tyrosyl-DNA phosphodiesterase 1, yeastyeast

Predictions only

Length 544 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDP1P38319 tA(UGC)QtA(UGC)Q 76 nt0.1□□□□□ -2.39
TDP1P38319 YJL113WYJL113W 4647 nt0.07□□□□□ -2.4
TDP1P38319 snR161snR161 161 nt-0.02□□□□□ -2.41
TDP1P38319 snR40snR40 97 nt-0.02□□□□□ -2.41
TDP1P38319 snR6snR6 112 nt-0.29□□□□□ -2.46
TDP1P38319 YOR335W-AYOR335W-A 81 nt-0.3□□□□□ -2.46
TDP1P38319 RPL41BYDL133C-A 78 nt-0.33□□□□□ -2.46
TDP1P38319 CDC65tQ(CUG)M 72 nt-0.34□□□□□ -2.46
TDP1P38319 YHL009W-BYHL009W-B 5409 nt-0.37□□□□□ -2.47
TDP1P38319 URB1YKL014C 5295 nt-0.4□□□□□ -2.47
TDP1P38319 YMR315W-AYMR315W-A 108 nt-0.44□□□□□ -2.48
TDP1P38319 snR73snR73 106 nt-0.45□□□□□ -2.48
TDP1P38319 snR33snR33 183 nt-0.51□□□□□ -2.49
TDP1P38319 tP(UGG)QtP(UGG)Q 72 nt-0.57□□□□□ -2.5
TDP1P38319 tT(UGU)G1tT(UGU)G1 72 nt-0.59□□□□□ -2.5
TDP1P38319 tT(UGU)G2tT(UGU)G2 72 nt-0.59□□□□□ -2.5
TDP1P38319 tT(UGU)PtT(UGU)P 72 nt-0.59□□□□□ -2.5
TDP1P38319 tC(GCA)QtC(GCA)Q 76 nt-0.64□□□□□ -2.51
TDP1P38319 snR58snR58 96 nt-0.68□□□□□ -2.52
TDP1P38319 YOR309CYOR309C 381 nt-0.69□□□□□ -2.52
TDP1P38319 YBR223W-AYBR223W-A 120 nt-0.84□□□□□ -2.54
TDP1P38319 YNR077CYNR077C 255 nt-0.97□□□□□ -2.56
TDP1P38319 tY(GUA)QtY(GUA)Q 84 nt-0.98□□□□□ -2.57
TDP1P38319 snR87snR87 109 nt-1.02□□□□□ -2.57
TDP1P38319 YBR126W-BYBR126W-B 144 nt-1.61□□□□□ -2.67
TDP1P38319 YDR543CYDR543C 300 nt-1.93□□□□□ -2.72
TDP1P38319 YOL166W-AYOL166W-A 156 nt-2.13□□□□□ -2.75
TDP1P38319 YJL136W-AYJL136W-A 84 nt-2.47□□□□□ -2.8
TDP1P38319 YJR162CYJR162C 351 nt-2.7□□□□□ -2.84
Retrieved 29 of 7,029 protein–RNA pairs in 2.9 ms