Protein–RNA interactions for Protein: Q04673

SSL1, General transcription and DNA repair factor IIH subunit SSL1, yeastyeast

Predicted RBP Predictions only

Length 461 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL1Q04673 YOL083C-AYOL083C-A 141 nt1.09□□□□□ -2.23
SSL1Q04673 YPR117WYPR117W 7470 nt1.07□□□□□ -2.24
SSL1Q04673 YJR029WYJR029W 5268 nt1.07□□□□□ -2.24
SSL1Q04673 YPR137C-BYPR137C-B 5268 nt1.07□□□□□ -2.24
SSL1Q04673 SCC2YDR180W 4482 nt1.07□□□□□ -2.24
SSL1Q04673 CSE1YGL238W 2883 nt1.06□□□□□ -2.24
SSL1Q04673 LTE1YAL024C 4308 nt1.05□□□□□ -2.24
SSL1Q04673 snR62snR62 100 nt1.02□□□□□ -2.25
SSL1Q04673 tD(GUC)QtD(GUC)Q 75 nt1.02□□□□□ -2.25
SSL1Q04673 YLL066W-BYLL066W-B 171 nt1.02□□□□□ -2.25
SSL1Q04673 YBL071C-BYBL071C-B 99 nt1.02□□□□□ -2.25
SSL1Q04673 YBL100W-CYBL100W-C 120 nt1.02□□□□□ -2.25
SSL1Q04673 snR69snR69 101 nt1.01□□□□□ -2.25
SSL1Q04673 YLR286W-AYLR286W-A 135 nt1.01□□□□□ -2.25
SSL1Q04673 EMT1tM(CAU)D 73 nt1□□□□□ -2.25
SSL1Q04673 EMT5tM(CAU)J1 73 nt1□□□□□ -2.25
SSL1Q04673 EMT3tM(CAU)J2 73 nt1□□□□□ -2.25
SSL1Q04673 EMT4tM(CAU)M 73 nt1□□□□□ -2.25
SSL1Q04673 RPS26AYGL189C 360 nt1□□□□□ -2.25
SSL1Q04673 EMT2tM(CAU)O2 73 nt1□□□□□ -2.25
SSL1Q04673 YJL077W-AYJL077W-A 87 nt0.99□□□□□ -2.25
SSL1Q04673 EST1YLR233C 2100 nt0.99□□□□□ -2.25
SSL1Q04673 YMR160WYMR160W 2451 nt0.99□□□□□ -2.25
SSL1Q04673 VAM6YDL077C 3150 nt0.99□□□□□ -2.25
SSL1Q04673 NIP1YMR309C 2439 nt0.98□□□□□ -2.25
SSL1Q04673 snR45snR45 172 nt0.98□□□□□ -2.25
SSL1Q04673 BUD3YCL014W 4911 nt0.96□□□□□ -2.26
SSL1Q04673 RDS3YPR094W 324 nt0.96□□□□□ -2.26
SSL1Q04673 YPL060C-AYPL060C-A 3315 nt0.95□□□□□ -2.26
SSL1Q04673 RKR1YMR247C 4689 nt0.95□□□□□ -2.26
SSL1Q04673 BEM2YER155C 6504 nt0.94□□□□□ -2.26
SSL1Q04673 BUL2YML111W 2763 nt0.94□□□□□ -2.26
SSL1Q04673 YKL145W-AYKL145W-A 93 nt0.94□□□□□ -2.26
SSL1Q04673 YLR299C-AYLR299C-A 93 nt0.93□□□□□ -2.26
SSL1Q04673 YOL164W-AYOL164W-A 183 nt0.93□□□□□ -2.26
SSL1Q04673 YDL159C-BYDL159C-B 177 nt0.91□□□□□ -2.26
SSL1Q04673 THO2YNL139C 4794 nt0.9□□□□□ -2.26
SSL1Q04673 YGR240C-AYGR240C-A 201 nt0.9□□□□□ -2.27
SSL1Q04673 PET111YMR257C 2403 nt0.9□□□□□ -2.27
SSL1Q04673 YOR192C-BYOR192C-B 5313 nt0.87□□□□□ -2.27
SSL1Q04673 MLP1YKR095W 5628 nt0.85□□□□□ -2.27
SSL1Q04673 YDR034C-AYDR034C-A 177 nt0.85□□□□□ -2.27
SSL1Q04673 YDR371C-AYDR371C-A 105 nt0.84□□□□□ -2.27
SSL1Q04673 tQ(UUG)QtQ(UUG)Q 76 nt0.82□□□□□ -2.28
SSL1Q04673 snR47snR47 99 nt0.81□□□□□ -2.28
SSL1Q04673 MYO1YHR023W 5787 nt0.79□□□□□ -2.28
SSL1Q04673 IQG1YPL242C 4488 nt0.79□□□□□ -2.28
SSL1Q04673 AI1Q0050 2505 nt0.78□□□□□ -2.28
SSL1Q04673 YPR159C-AYPR159C-A 102 nt0.74□□□□□ -2.29
SSL1Q04673 ORC3YLL004W 1851 nt0.73□□□□□ -2.29
SSL1Q04673 YHR180C-BYHR180C-B 105 nt0.73□□□□□ -2.29
SSL1Q04673 FMP27YLR454W 7887 nt0.71□□□□□ -2.3
SSL1Q04673 YER090C-AYER090C-A 90 nt0.71□□□□□ -2.3
SSL1Q04673 YML054C-AYML054C-A 159 nt0.71□□□□□ -2.3
SSL1Q04673 MLP2YIL149C 5040 nt0.69□□□□□ -2.3
SSL1Q04673 YNL054W-BYNL054W-B 5250 nt0.69□□□□□ -2.3
SSL1Q04673 YBL100W-BYBL100W-B 5313 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)BtT(AGU)B 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)CtT(AGU)C 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)DtT(AGU)D 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)HtT(AGU)H 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)I1tT(AGU)I1 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)I2tT(AGU)I2 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)JtT(AGU)J 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)N1tT(AGU)N1 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)N2tT(AGU)N2 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)O1tT(AGU)O1 73 nt0.68□□□□□ -2.3
SSL1Q04673 tT(AGU)O2tT(AGU)O2 73 nt0.68□□□□□ -2.3
SSL1Q04673 YER078W-AYER078W-A 165 nt0.64□□□□□ -2.31
SSL1Q04673 YOR186C-AYOR186C-A 210 nt0.64□□□□□ -2.31
SSL1Q04673 snR50snR50 90 nt0.64□□□□□ -2.31
SSL1Q04673 RPL41AYDL184C 78 nt0.63□□□□□ -2.31
SSL1Q04673 YBR296C-AYBR296C-A 120 nt0.61□□□□□ -2.31
SSL1Q04673 YMR272W-AYMR272W-A 114 nt0.6□□□□□ -2.31
SSL1Q04673 YBR109W-AYBR109W-A 225 nt0.6□□□□□ -2.31
SSL1Q04673 UTP10YJL109C 5310 nt0.56□□□□□ -2.32
SSL1Q04673 snR64snR64 101 nt0.56□□□□□ -2.32
SSL1Q04673 snR67snR67 82 nt0.56□□□□□ -2.32
SSL1Q04673 YKL225WYKL225W 348 nt0.56□□□□□ -2.32
SSL1Q04673 snR53snR53 91 nt0.51□□□□□ -2.33
SSL1Q04673 snR38snR38 95 nt0.47□□□□□ -2.33
SSL1Q04673 ESP1YGR098C 4893 nt0.41□□□□□ -2.34
SSL1Q04673 YML100W-AYML100W-A 174 nt0.37□□□□□ -2.35
SSL1Q04673 SOV1YMR066W 2697 nt0.36□□□□□ -2.35
SSL1Q04673 SKI7YOR076C 2244 nt0.34□□□□□ -2.35
SSL1Q04673 YOL013W-AYOL013W-A 192 nt0.34□□□□□ -2.36
SSL1Q04673 YJL113WYJL113W 4647 nt0.32□□□□□ -2.36
SSL1Q04673 snR128snR128 126 nt0.3□□□□□ -2.36
SSL1Q04673 YKL106C-AYKL106C-A 120 nt0.2□□□□□ -2.38
SSL1Q04673 YDL159W-AYDL159W-A 132 nt0.19□□□□□ -2.38
SSL1Q04673 YGR122C-AYGR122C-A 129 nt0.19□□□□□ -2.38
SSL1Q04673 PAU9YBL108C-A 129 nt0.13□□□□□ -2.39
SSL1Q04673 YLR149C-AYLR149C-A 87 nt0.07□□□□□ -2.4
SSL1Q04673 YNR077CYNR077C 255 nt0□□□□□ -2.41
SSL1Q04673 YOR376W-AYOR376W-A 156 nt0□□□□□ -2.41
SSL1Q04673 tA(UGC)QtA(UGC)Q 76 nt-0.02□□□□□ -2.41
SSL1Q04673 YOR316C-AYOR316C-A 210 nt-0.04□□□□□ -2.42
SSL1Q04673 YDL114W-AYDL114W-A 114 nt-0.05□□□□□ -2.42
SSL1Q04673 YKL096C-BYKL096C-B 150 nt-0.05□□□□□ -2.42
SSL1Q04673 SBH2YER019C-A 267 nt-0.08□□□□□ -2.42
Retrieved 100 of 7,029 protein–RNA pairs in 35.5 ms