Protein–RNA interactions for Protein: P54787

VPS9, Vacuolar protein sorting-associated protein 9, yeastyeast

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS9P54787 tM(CAU)Q2tM(CAU)Q2 78 nt-0.51□□□□□ -2.49
VPS9P54787 YJL113WYJL113W 4647 nt-0.51□□□□□ -2.49
VPS9P54787 YJL077W-AYJL077W-A 87 nt-0.54□□□□□ -2.5
VPS9P54787 SEC10YLR166C 2616 nt-0.55□□□□□ -2.5
VPS9P54787 snR80snR80 171 nt-0.56□□□□□ -2.5
VPS9P54787 snR46snR46 197 nt-0.58□□□□□ -2.5
VPS9P54787 snR69snR69 101 nt-0.59□□□□□ -2.5
VPS9P54787 YML100W-AYML100W-A 174 nt-0.59□□□□□ -2.5
VPS9P54787 YOR329W-AYOR329W-A 210 nt-0.59□□□□□ -2.5
VPS9P54787 snR39BsnR39B 96 nt-0.61□□□□□ -2.51
VPS9P54787 YGR146C-AYGR146C-A 162 nt-0.62□□□□□ -2.51
VPS9P54787 tQ(UUG)QtQ(UUG)Q 76 nt-0.63□□□□□ -2.51
VPS9P54787 YIL071W-AYIL071W-A 477 nt-0.65□□□□□ -2.51
VPS9P54787 YDL007C-AYDL007C-A 258 nt-0.66□□□□□ -2.52
VPS9P54787 snR52snR52 92 nt-0.68□□□□□ -2.52
VPS9P54787 URB1YKL014C 5295 nt-0.68□□□□□ -2.52
VPS9P54787 Q0142Q0142 177 nt-0.7□□□□□ -2.52
VPS9P54787 PMP2YEL017C-A 132 nt-0.71□□□□□ -2.52
VPS9P54787 YNL067W-BYNL067W-B 141 nt-0.71□□□□□ -2.52
VPS9P54787 snR48snR48 113 nt-0.73□□□□□ -2.53
VPS9P54787 RDS3YPR094W 324 nt-0.74□□□□□ -2.53
VPS9P54787 tA(UGC)QtA(UGC)Q 76 nt-0.75□□□□□ -2.53
VPS9P54787 YLR342W-AYLR342W-A 174 nt-0.76□□□□□ -2.53
VPS9P54787 PAU9YBL108C-A 129 nt-0.77□□□□□ -2.53
VPS9P54787 YER090C-AYER090C-A 90 nt-0.78□□□□□ -2.53
VPS9P54787 tL(UAA)QtL(UAA)Q 85 nt-0.79□□□□□ -2.54
VPS9P54787 snR50snR50 90 nt-0.79□□□□□ -2.54
VPS9P54787 YNL266WYNL266W 420 nt-0.8□□□□□ -2.54
VPS9P54787 JLP2YMR132C 627 nt-0.85□□□□□ -2.55
VPS9P54787 snR33snR33 183 nt-0.87□□□□□ -2.55
VPS9P54787 tD(GUC)QtD(GUC)Q 75 nt-0.88□□□□□ -2.55
VPS9P54787 YHL015W-AYHL015W-A 84 nt-0.88□□□□□ -2.55
VPS9P54787 YNL205CYNL205C 423 nt-0.89□□□□□ -2.55
VPS9P54787 tT(UGU)G1tT(UGU)G1 72 nt-0.9□□□□□ -2.55
VPS9P54787 tT(UGU)G2tT(UGU)G2 72 nt-0.9□□□□□ -2.55
VPS9P54787 tT(UGU)PtT(UGU)P 72 nt-0.9□□□□□ -2.55
VPS9P54787 YDR406W-AYDR406W-A 246 nt-0.92□□□□□ -2.56
VPS9P54787 YBR178WYBR178W 375 nt-0.93□□□□□ -2.56
VPS9P54787 YOR102WYOR102W 351 nt-0.94□□□□□ -2.56
VPS9P54787 YLR286W-AYLR286W-A 135 nt-0.96□□□□□ -2.56
VPS9P54787 YDL159C-BYDL159C-B 177 nt-1.03□□□□□ -2.57
VPS9P54787 snR67snR67 82 nt-1.04□□□□□ -2.58
VPS9P54787 YJL150WYJL150W 303 nt-1.04□□□□□ -2.58
VPS9P54787 YHL009W-BYHL009W-B 5409 nt-1.06□□□□□ -2.58
VPS9P54787 YNL198CYNL198C 303 nt-1.07□□□□□ -2.58
VPS9P54787 snR161snR161 161 nt-1.11□□□□□ -2.59
VPS9P54787 YBL053WYBL053W 375 nt-1.13□□□□□ -2.59
VPS9P54787 SKI7YOR076C 2244 nt-1.16□□□□□ -2.59
VPS9P54787 YMR046W-AYMR046W-A 129 nt-1.17□□□□□ -2.6
VPS9P54787 YBR196C-AYBR196C-A 150 nt-1.17□□□□□ -2.6
VPS9P54787 YLR299C-AYLR299C-A 93 nt-1.2□□□□□ -2.6
VPS9P54787 SPG3YDR504C 384 nt-1.23□□□□□ -2.61
VPS9P54787 tP(UGG)QtP(UGG)Q 72 nt-1.3□□□□□ -2.62
VPS9P54787 SOM1YEL059C-A 225 nt-1.31□□□□□ -2.62
VPS9P54787 YBR223W-AYBR223W-A 120 nt-1.31□□□□□ -2.62
VPS9P54787 YML054C-AYML054C-A 159 nt-1.4□□□□□ -2.63
VPS9P54787 tM(CAU)Q1tM(CAU)Q1 76 nt-1.41□□□□□ -2.64
VPS9P54787 YCR095W-AYCR095W-A 159 nt-1.44□□□□□ -2.64
VPS9P54787 YHR180C-BYHR180C-B 105 nt-1.54□□□□□ -2.66
VPS9P54787 YLR466C-BYLR466C-B 117 nt-1.55□□□□□ -2.66
VPS9P54787 YNR077CYNR077C 255 nt-1.56□□□□□ -2.66
VPS9P54787 YGR151CYGR151C 336 nt-1.58□□□□□ -2.66
VPS9P54787 tY(GUA)QtY(GUA)Q 84 nt-1.66□□□□□ -2.68
VPS9P54787 YNL338WYNL338W 159 nt-1.69□□□□□ -2.68
VPS9P54787 YOR376W-AYOR376W-A 156 nt-1.7□□□□□ -2.68
VPS9P54787 YCL001W-BYCL001W-B 255 nt-1.71□□□□□ -2.68
VPS9P54787 YOL083C-AYOL083C-A 141 nt-1.77□□□□□ -2.69
VPS9P54787 CDC65tQ(CUG)M 72 nt-1.78□□□□□ -2.69
VPS9P54787 YGR240C-AYGR240C-A 201 nt-1.78□□□□□ -2.69
VPS9P54787 snR77snR77 88 nt-1.79□□□□□ -2.7
VPS9P54787 YBL071C-BYBL071C-B 99 nt-1.82□□□□□ -2.7
VPS9P54787 YBR109W-AYBR109W-A 225 nt-1.84□□□□□ -2.7
VPS9P54787 YBR296C-AYBR296C-A 120 nt-1.86□□□□□ -2.71
VPS9P54787 YKL106C-AYKL106C-A 120 nt-1.87□□□□□ -2.71
VPS9P54787 RPL41AYDL184C 78 nt-1.88□□□□□ -2.71
VPS9P54787 YAL037C-AYAL037C-A 93 nt-1.95□□□□□ -2.72
VPS9P54787 YOL164W-AYOL164W-A 183 nt-1.95□□□□□ -2.72
VPS9P54787 YOR316C-AYOR316C-A 210 nt-1.95□□□□□ -2.72
VPS9P54787 YNL337WYNL337W 255 nt-1.97□□□□□ -2.72
VPS9P54787 snR38snR38 95 nt-1.97□□□□□ -2.72
VPS9P54787 snR81snR81 201 nt-1.98□□□□□ -2.73
VPS9P54787 YMR315W-AYMR315W-A 108 nt-2.02□□□□□ -2.73
VPS9P54787 Q0032Q0032 291 nt-2.06□□□□□ -2.74
VPS9P54787 snR47snR47 99 nt-2.07□□□□□ -2.74
VPS9P54787 YBL100W-CYBL100W-C 120 nt-2.12□□□□□ -2.75
VPS9P54787 YGL007C-AYGL007C-A 87 nt-2.14□□□□□ -2.75
VPS9P54787 YBR126W-BYBR126W-B 144 nt-2.24□□□□□ -2.77
VPS9P54787 YOR309CYOR309C 381 nt-2.32□□□□□ -2.78
VPS9P54787 tS(GCU)Q1tS(GCU)Q1 86 nt-2.34□□□□□ -2.78
VPS9P54787 YGL041C-BYGL041C-B 183 nt-2.38□□□□□ -2.79
VPS9P54787 YKL225WYKL225W 348 nt-2.41□□□□□ -2.8
VPS9P54787 YNL103W-AYNL103W-A 90 nt-2.43□□□□□ -2.8
VPS9P54787 snR61snR61 90 nt-2.48□□□□□ -2.81
VPS9P54787 YLR294CYLR294C 330 nt-2.5□□□□□ -2.81
VPS9P54787 YOR225WYOR225W 330 nt-2.54□□□□□ -2.82
VPS9P54787 YDR034C-AYDR034C-A 177 nt-2.62□□□□□ -2.83
VPS9P54787 YNL170WYNL170W 396 nt-2.63□□□□□ -2.83
VPS9P54787 snR6snR6 112 nt-2.64□□□□□ -2.83
VPS9P54787 snR62snR62 100 nt-2.69□□□□□ -2.84
VPS9P54787 YDL114W-AYDL114W-A 114 nt-2.69□□□□□ -2.84
Retrieved 100 of 7,029 protein–RNA pairs in 8.6 ms