Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YOR314W-AYOR314W-A 111 nt0.65□□□□□ -2.31
RPN11P43588 THO2YNL139C 4794 nt0.65□□□□□ -2.31
RPN11P43588 YDL007C-AYDL007C-A 258 nt0.64□□□□□ -2.31
RPN11P43588 YPR159C-AYPR159C-A 102 nt0.64□□□□□ -2.31
RPN11P43588 YMR272W-AYMR272W-A 114 nt0.63□□□□□ -2.31
RPN11P43588 ORC3YLL004W 1851 nt0.63□□□□□ -2.31
RPN11P43588 YDR371C-AYDR371C-A 105 nt0.62□□□□□ -2.31
RPN11P43588 SBH1YER087C-B 249 nt0.61□□□□□ -2.31
RPN11P43588 RPS26AYGL189C 360 nt0.61□□□□□ -2.31
RPN11P43588 YNL067W-BYNL067W-B 141 nt0.61□□□□□ -2.31
RPN11P43588 GLG1YKR058W 1851 nt0.6□□□□□ -2.31
RPN11P43588 NIP1YMR309C 2439 nt0.59□□□□□ -2.31
RPN11P43588 YGR164WYGR164W 336 nt0.5□□□□□ -2.33
RPN11P43588 MLP2YIL149C 5040 nt0.48□□□□□ -2.33
RPN11P43588 YGR146C-AYGR146C-A 162 nt0.47□□□□□ -2.33
RPN11P43588 YCL001W-BYCL001W-B 255 nt0.46□□□□□ -2.34
RPN11P43588 SOM1YEL059C-A 225 nt0.44□□□□□ -2.34
RPN11P43588 YIL071W-AYIL071W-A 477 nt0.42□□□□□ -2.34
RPN11P43588 RCO1YMR075W 2055 nt0.42□□□□□ -2.34
RPN11P43588 MLP1YKR095W 5628 nt0.41□□□□□ -2.34
RPN11P43588 YNL170WYNL170W 396 nt0.41□□□□□ -2.34
RPN11P43588 YNL205CYNL205C 423 nt0.39□□□□□ -2.35
RPN11P43588 YBR099CYBR099C 384 nt0.39□□□□□ -2.35
RPN11P43588 ATP8Q0080 147 nt0.38□□□□□ -2.35
RPN11P43588 YCR095W-AYCR095W-A 159 nt0.37□□□□□ -2.35
RPN11P43588 YBL100W-BYBL100W-B 5313 nt0.36□□□□□ -2.35
RPN11P43588 EST1YLR233C 2100 nt0.36□□□□□ -2.35
RPN11P43588 snR69snR69 101 nt0.35□□□□□ -2.35
RPN11P43588 PMP2YEL017C-A 132 nt0.35□□□□□ -2.35
RPN11P43588 Q0092Q0092 141 nt0.34□□□□□ -2.36
RPN11P43588 ESP1YGR098C 4893 nt0.32□□□□□ -2.36
RPN11P43588 YOR186C-AYOR186C-A 210 nt0.32□□□□□ -2.36
RPN11P43588 YNL266WYNL266W 420 nt0.31□□□□□ -2.36
RPN11P43588 YBR178WYBR178W 375 nt0.31□□□□□ -2.36
RPN11P43588 YNL054W-BYNL054W-B 5250 nt0.3□□□□□ -2.36
RPN11P43588 tQ(UUG)QtQ(UUG)Q 76 nt0.3□□□□□ -2.36
RPN11P43588 SEC10YLR166C 2616 nt0.29□□□□□ -2.36
RPN11P43588 snR45snR45 172 nt0.28□□□□□ -2.36
RPN11P43588 tD(GUC)QtD(GUC)Q 75 nt0.24□□□□□ -2.37
RPN11P43588 YJL077W-AYJL077W-A 87 nt0.24□□□□□ -2.37
RPN11P43588 YOL013W-AYOL013W-A 192 nt0.24□□□□□ -2.37
RPN11P43588 RDS3YPR094W 324 nt0.23□□□□□ -2.37
RPN11P43588 YBR196C-AYBR196C-A 150 nt0.23□□□□□ -2.37
RPN11P43588 RPM2YML091C 3609 nt0.19□□□□□ -2.38
RPN11P43588 YJL113WYJL113W 4647 nt0.18□□□□□ -2.38
RPN11P43588 SOV1YMR066W 2697 nt0.17□□□□□ -2.38
RPN11P43588 YLR286W-AYLR286W-A 135 nt0.15□□□□□ -2.39
RPN11P43588 snR50snR50 90 nt0.15□□□□□ -2.39
RPN11P43588 YDL159C-BYDL159C-B 177 nt0.14□□□□□ -2.39
RPN11P43588 snR128snR128 126 nt0.12□□□□□ -2.39
RPN11P43588 YPL060C-AYPL060C-A 3315 nt0.12□□□□□ -2.39
RPN11P43588 YLR299C-AYLR299C-A 93 nt0.08□□□□□ -2.4
RPN11P43588 YER090C-AYER090C-A 90 nt0.07□□□□□ -2.4
RPN11P43588 YNL103W-AYNL103W-A 90 nt0.07□□□□□ -2.4
RPN11P43588 YOL083C-AYOL083C-A 141 nt0.04□□□□□ -2.4
RPN11P43588 TFB5YDR079C-A 219 nt0.02□□□□□ -2.41
RPN11P43588 YGL041C-BYGL041C-B 183 nt-0.05□□□□□ -2.42
RPN11P43588 YML054C-AYML054C-A 159 nt-0.05□□□□□ -2.42
RPN11P43588 snR81snR81 201 nt-0.06□□□□□ -2.42
RPN11P43588 YML100W-AYML100W-A 174 nt-0.06□□□□□ -2.42
RPN11P43588 YBL071C-BYBL071C-B 99 nt-0.06□□□□□ -2.42
RPN11P43588 Q0143Q0143 153 nt-0.07□□□□□ -2.42
RPN11P43588 snR61snR61 90 nt-0.09□□□□□ -2.42
RPN11P43588 snR67snR67 82 nt-0.09□□□□□ -2.42
RPN11P43588 YAL037C-AYAL037C-A 93 nt-0.1□□□□□ -2.43
RPN11P43588 PAU9YBL108C-A 129 nt-0.11□□□□□ -2.43
RPN11P43588 YHR180C-BYHR180C-B 105 nt-0.13□□□□□ -2.43
RPN11P43588 YOL164W-AYOL164W-A 183 nt-0.18□□□□□ -2.44
RPN11P43588 snR85snR85 171 nt-0.19□□□□□ -2.44
RPN11P43588 SBH2YER019C-A 267 nt-0.21□□□□□ -2.44
RPN11P43588 snR47snR47 99 nt-0.22□□□□□ -2.44
RPN11P43588 SKI7YOR076C 2244 nt-0.26□□□□□ -2.45
RPN11P43588 YBL100W-CYBL100W-C 120 nt-0.26□□□□□ -2.45
RPN11P43588 YGR240C-AYGR240C-A 201 nt-0.28□□□□□ -2.45
RPN11P43588 tA(UGC)QtA(UGC)Q 76 nt-0.31□□□□□ -2.46
RPN11P43588 YBR109W-AYBR109W-A 225 nt-0.32□□□□□ -2.46
RPN11P43588 RPL41AYDL184C 78 nt-0.33□□□□□ -2.46
RPN11P43588 tS(GCU)Q1tS(GCU)Q1 86 nt-0.33□□□□□ -2.46
RPN11P43588 YBL109WYBL109W 336 nt-0.37□□□□□ -2.47
RPN11P43588 YBR296C-AYBR296C-A 120 nt-0.37□□□□□ -2.47
RPN11P43588 YMR326CYMR326C 309 nt-0.38□□□□□ -2.47
RPN11P43588 snR38snR38 95 nt-0.42□□□□□ -2.48
RPN11P43588 YDR034C-AYDR034C-A 177 nt-0.44□□□□□ -2.48
RPN11P43588 YHR217CYHR217C 462 nt-0.44□□□□□ -2.48
RPN11P43588 snR62snR62 100 nt-0.46□□□□□ -2.48
RPN11P43588 URB1YKL014C 5295 nt-0.47□□□□□ -2.49
RPN11P43588 YHL009W-BYHL009W-B 5409 nt-0.5□□□□□ -2.49
RPN11P43588 YDR524C-AYDR524C-A 120 nt-0.55□□□□□ -2.5
RPN11P43588 YKL225WYKL225W 348 nt-0.55□□□□□ -2.5
RPN11P43588 snR161snR161 161 nt-0.55□□□□□ -2.5
RPN11P43588 YKL106C-AYKL106C-A 120 nt-0.57□□□□□ -2.5
RPN11P43588 YNR077CYNR077C 255 nt-0.57□□□□□ -2.5
RPN11P43588 YOR376W-AYOR376W-A 156 nt-0.59□□□□□ -2.5
RPN11P43588 YLL066W-BYLL066W-B 171 nt-0.64□□□□□ -2.51
RPN11P43588 snR33snR33 183 nt-0.67□□□□□ -2.52
RPN11P43588 tT(UGU)G1tT(UGU)G1 72 nt-0.72□□□□□ -2.52
RPN11P43588 tT(UGU)G2tT(UGU)G2 72 nt-0.72□□□□□ -2.52
RPN11P43588 tT(UGU)PtT(UGU)P 72 nt-0.72□□□□□ -2.52
RPN11P43588 snR64snR64 101 nt-0.78□□□□□ -2.53
RPN11P43588 YDL247W-AYDL247W-A 75 nt-0.79□□□□□ -2.54
Retrieved 100 of 7,029 protein–RNA pairs in 947.1 ms