Protein–RNA interactions for Protein: P40016

RPN3, 26S proteasome regulatory subunit RPN3, yeastyeast

Known RBP Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN3P40016 YGR240C-AYGR240C-A 201 nt1.22□□□□□ -2.21
RPN3P40016 CSE1YGL238W 2883 nt1.22□□□□□ -2.21
RPN3P40016 snR69snR69 101 nt1.2□□□□□ -2.22
RPN3P40016 snR47snR47 99 nt1.17□□□□□ -2.22
RPN3P40016 NIP1YMR309C 2439 nt1.17□□□□□ -2.22
RPN3P40016 YJR029WYJR029W 5268 nt1.15□□□□□ -2.22
RPN3P40016 YPR137C-BYPR137C-B 5268 nt1.15□□□□□ -2.22
RPN3P40016 YLR299C-AYLR299C-A 93 nt1.15□□□□□ -2.23
RPN3P40016 CLU1YMR012W 3834 nt1.15□□□□□ -2.23
RPN3P40016 YOR192C-BYOR192C-B 5313 nt1.14□□□□□ -2.23
RPN3P40016 ORC3YLL004W 1851 nt1.14□□□□□ -2.23
RPN3P40016 YDL159C-BYDL159C-B 177 nt1.13□□□□□ -2.23
RPN3P40016 RDS3YPR094W 324 nt1.12□□□□□ -2.23
RPN3P40016 BUL2YML111W 2763 nt1.08□□□□□ -2.24
RPN3P40016 PAU12YGR294W 363 nt1.08□□□□□ -2.24
RPN3P40016 YPL060C-AYPL060C-A 3315 nt1.06□□□□□ -2.24
RPN3P40016 NST1YNL091W 3723 nt1.06□□□□□ -2.24
RPN3P40016 VAM6YDL077C 3150 nt1.06□□□□□ -2.24
RPN3P40016 YJL077W-AYJL077W-A 87 nt1.04□□□□□ -2.24
RPN3P40016 DOP1YDR141C 5097 nt1.04□□□□□ -2.24
RPN3P40016 YPR117WYPR117W 7470 nt1.02□□□□□ -2.25
RPN3P40016 tQ(UUG)QtQ(UUG)Q 76 nt1.02□□□□□ -2.25
RPN3P40016 SCC2YDR180W 4482 nt1.01□□□□□ -2.25
RPN3P40016 YML054C-AYML054C-A 159 nt1□□□□□ -2.25
RPN3P40016 YNL054W-BYNL054W-B 5250 nt0.99□□□□□ -2.25
RPN3P40016 BEM2YER155C 6504 nt0.99□□□□□ -2.25
RPN3P40016 YDR371C-AYDR371C-A 105 nt0.98□□□□□ -2.25
RPN3P40016 PAU24YBR301W 363 nt0.98□□□□□ -2.25
RPN3P40016 EMT1tM(CAU)D 73 nt0.97□□□□□ -2.25
RPN3P40016 EMT5tM(CAU)J1 73 nt0.97□□□□□ -2.25
RPN3P40016 EMT3tM(CAU)J2 73 nt0.97□□□□□ -2.25
RPN3P40016 EMT4tM(CAU)M 73 nt0.97□□□□□ -2.25
RPN3P40016 EMT2tM(CAU)O2 73 nt0.97□□□□□ -2.25
RPN3P40016 YHR180C-BYHR180C-B 105 nt0.96□□□□□ -2.26
RPN3P40016 PET111YMR257C 2403 nt0.95□□□□□ -2.26
RPN3P40016 snR64snR64 101 nt0.92□□□□□ -2.26
RPN3P40016 YBR109W-AYBR109W-A 225 nt0.91□□□□□ -2.26
RPN3P40016 YKL225WYKL225W 348 nt0.89□□□□□ -2.27
RPN3P40016 snR50snR50 90 nt0.89□□□□□ -2.27
RPN3P40016 RPL41AYDL184C 78 nt0.88□□□□□ -2.27
RPN3P40016 snR53snR53 91 nt0.87□□□□□ -2.27
RPN3P40016 LTE1YAL024C 4308 nt0.87□□□□□ -2.27
RPN3P40016 YER090C-AYER090C-A 90 nt0.86□□□□□ -2.27
RPN3P40016 tF(GAA)BtF(GAA)B 73 nt0.85□□□□□ -2.27
RPN3P40016 tF(GAA)FtF(GAA)F 73 nt0.85□□□□□ -2.27
RPN3P40016 tF(GAA)GtF(GAA)G 73 nt0.85□□□□□ -2.27
RPN3P40016 tF(GAA)H1tF(GAA)H1 73 nt0.85□□□□□ -2.27
RPN3P40016 tF(GAA)H2tF(GAA)H2 73 nt0.85□□□□□ -2.27
RPN3P40016 tF(GAA)MtF(GAA)M 73 nt0.85□□□□□ -2.27
RPN3P40016 tF(GAA)P1tF(GAA)P1 73 nt0.85□□□□□ -2.27
RPN3P40016 tF(GAA)P2tF(GAA)P2 73 nt0.85□□□□□ -2.27
RPN3P40016 YBR296C-AYBR296C-A 120 nt0.83□□□□□ -2.28
RPN3P40016 snR38snR38 95 nt0.82□□□□□ -2.28
RPN3P40016 AI1Q0050 2505 nt0.78□□□□□ -2.28
RPN3P40016 YBL100W-BYBL100W-B 5313 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)BtT(AGU)B 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)CtT(AGU)C 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)DtT(AGU)D 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)HtT(AGU)H 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)I1tT(AGU)I1 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)I2tT(AGU)I2 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)JtT(AGU)J 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)N1tT(AGU)N1 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)N2tT(AGU)N2 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)O1tT(AGU)O1 73 nt0.77□□□□□ -2.29
RPN3P40016 tT(AGU)O2tT(AGU)O2 73 nt0.77□□□□□ -2.29
RPN3P40016 YMR160WYMR160W 2451 nt0.75□□□□□ -2.29
RPN3P40016 UTP20YBL004W 7482 nt0.73□□□□□ -2.29
RPN3P40016 UTP10YJL109C 5310 nt0.71□□□□□ -2.3
RPN3P40016 YKL145W-AYKL145W-A 93 nt0.71□□□□□ -2.3
RPN3P40016 YOL014WYOL014W 375 nt0.71□□□□□ -2.3
RPN3P40016 snR67snR67 82 nt0.69□□□□□ -2.3
RPN3P40016 YPR159C-AYPR159C-A 102 nt0.67□□□□□ -2.3
RPN3P40016 YDL159W-AYDL159W-A 132 nt0.66□□□□□ -2.3
RPN3P40016 YMR272W-AYMR272W-A 114 nt0.65□□□□□ -2.31
RPN3P40016 MLP1YKR095W 5628 nt0.65□□□□□ -2.31
RPN3P40016 SKI7YOR076C 2244 nt0.64□□□□□ -2.31
RPN3P40016 MLP2YIL149C 5040 nt0.62□□□□□ -2.31
RPN3P40016 YOR186C-AYOR186C-A 210 nt0.6□□□□□ -2.31
RPN3P40016 IQG1YPL242C 4488 nt0.59□□□□□ -2.31
RPN3P40016 THO2YNL139C 4794 nt0.54□□□□□ -2.32
RPN3P40016 YGR122C-AYGR122C-A 129 nt0.53□□□□□ -2.32
RPN3P40016 FMP27YLR454W 7887 nt0.51□□□□□ -2.33
RPN3P40016 YLR149C-AYLR149C-A 87 nt0.48□□□□□ -2.33
RPN3P40016 YML100W-AYML100W-A 174 nt0.46□□□□□ -2.34
RPN3P40016 SOV1YMR066W 2697 nt0.45□□□□□ -2.34
RPN3P40016 YKL106C-AYKL106C-A 120 nt0.39□□□□□ -2.35
RPN3P40016 snR128snR128 126 nt0.34□□□□□ -2.36
RPN3P40016 YOL013W-AYOL013W-A 192 nt0.32□□□□□ -2.36
RPN3P40016 ESP1YGR098C 4893 nt0.32□□□□□ -2.36
RPN3P40016 YER078W-AYER078W-A 165 nt0.31□□□□□ -2.36
RPN3P40016 YKL096C-BYKL096C-B 150 nt0.29□□□□□ -2.36
RPN3P40016 PAU9YBL108C-A 129 nt0.25□□□□□ -2.37
RPN3P40016 YOR376W-AYOR376W-A 156 nt0.23□□□□□ -2.37
RPN3P40016 YDL114W-AYDL114W-A 114 nt0.2□□□□□ -2.38
RPN3P40016 tV(UAC)QtV(UAC)Q 76 nt0.12□□□□□ -2.39
RPN3P40016 YOR316C-AYOR316C-A 210 nt0.09□□□□□ -2.4
RPN3P40016 snR75snR75 89 nt0.04□□□□□ -2.4
RPN3P40016 tA(UGC)QtA(UGC)Q 76 nt0.04□□□□□ -2.4
RPN3P40016 SBH2YER019C-A 267 nt0.02□□□□□ -2.41
Retrieved 100 of 7,029 protein–RNA pairs in 71.4 ms