Protein–RNA interactions for Protein: P38959

VPS41, Vacuolar protein sorting-associated protein 41, yeastyeast

Predictions only

Length 992 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS41P38959 tT(AGU)N2tT(AGU)N2 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)O1tT(AGU)O1 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)O2tT(AGU)O2 73 nt0.65□□□□□ -2.31
VPS41P38959 LTE1YAL024C 4308 nt0.65□□□□□ -2.31
VPS41P38959 RPM2YML091C 3609 nt0.64□□□□□ -2.31
VPS41P38959 YDR371C-AYDR371C-A 105 nt0.63□□□□□ -2.31
VPS41P38959 RPS26AYGL189C 360 nt0.63□□□□□ -2.31
VPS41P38959 PAU12YGR294W 363 nt0.63□□□□□ -2.31
VPS41P38959 YBR196C-AYBR196C-A 150 nt0.62□□□□□ -2.31
VPS41P38959 SEC10YLR166C 2616 nt0.6□□□□□ -2.31
VPS41P38959 UTP10YJL109C 5310 nt0.6□□□□□ -2.31
VPS41P38959 snR61snR61 90 nt0.6□□□□□ -2.31
VPS41P38959 TFB5YDR079C-A 219 nt0.59□□□□□ -2.31
VPS41P38959 ORC3YLL004W 1851 nt0.58□□□□□ -2.32
VPS41P38959 snR69snR69 101 nt0.58□□□□□ -2.32
VPS41P38959 RCO1YMR075W 2055 nt0.58□□□□□ -2.32
VPS41P38959 MYO1YHR023W 5787 nt0.58□□□□□ -2.32
VPS41P38959 SBH1YER087C-B 249 nt0.57□□□□□ -2.32
VPS41P38959 BUL2YML111W 2763 nt0.57□□□□□ -2.32
VPS41P38959 EST1YLR233C 2100 nt0.56□□□□□ -2.32
VPS41P38959 YGL041C-BYGL041C-B 183 nt0.55□□□□□ -2.32
VPS41P38959 YJL077W-AYJL077W-A 87 nt0.55□□□□□ -2.32
VPS41P38959 MLP1YKR095W 5628 nt0.55□□□□□ -2.32
VPS41P38959 YMR160WYMR160W 2451 nt0.55□□□□□ -2.32
VPS41P38959 tD(GUC)QtD(GUC)Q 75 nt0.54□□□□□ -2.32
VPS41P38959 UTP20YBL004W 7482 nt0.54□□□□□ -2.32
VPS41P38959 RDS3YPR094W 324 nt0.52□□□□□ -2.33
VPS41P38959 tQ(UUG)QtQ(UUG)Q 76 nt0.51□□□□□ -2.33
VPS41P38959 YMR326CYMR326C 309 nt0.49□□□□□ -2.33
VPS41P38959 tF(GAA)BtF(GAA)B 73 nt0.48□□□□□ -2.33
VPS41P38959 tF(GAA)FtF(GAA)F 73 nt0.48□□□□□ -2.33
VPS41P38959 tF(GAA)GtF(GAA)G 73 nt0.48□□□□□ -2.33
VPS41P38959 tF(GAA)H1tF(GAA)H1 73 nt0.48□□□□□ -2.33
VPS41P38959 tF(GAA)H2tF(GAA)H2 73 nt0.48□□□□□ -2.33
VPS41P38959 tF(GAA)MtF(GAA)M 73 nt0.48□□□□□ -2.33
VPS41P38959 tF(GAA)P1tF(GAA)P1 73 nt0.48□□□□□ -2.33
VPS41P38959 tF(GAA)P2tF(GAA)P2 73 nt0.48□□□□□ -2.33
VPS41P38959 YLR286W-AYLR286W-A 135 nt0.48□□□□□ -2.33
VPS41P38959 YOL083C-AYOL083C-A 141 nt0.47□□□□□ -2.33
VPS41P38959 YBL109WYBL109W 336 nt0.47□□□□□ -2.33
VPS41P38959 YKL145W-AYKL145W-A 93 nt0.46□□□□□ -2.34
VPS41P38959 YDL159C-BYDL159C-B 177 nt0.45□□□□□ -2.34
VPS41P38959 YDR524C-AYDR524C-A 120 nt0.45□□□□□ -2.34
VPS41P38959 YOR186C-AYOR186C-A 210 nt0.45□□□□□ -2.34
VPS41P38959 snR81snR81 201 nt0.44□□□□□ -2.34
VPS41P38959 YAL037C-AYAL037C-A 93 nt0.44□□□□□ -2.34
VPS41P38959 YLR299C-AYLR299C-A 93 nt0.43□□□□□ -2.34
VPS41P38959 AI1Q0050 2505 nt0.4□□□□□ -2.34
VPS41P38959 YBL100W-BYBL100W-B 5313 nt0.4□□□□□ -2.35
VPS41P38959 YHR217CYHR217C 462 nt0.4□□□□□ -2.35
VPS41P38959 MLP2YIL149C 5040 nt0.39□□□□□ -2.35
VPS41P38959 YBL071C-BYBL071C-B 99 nt0.37□□□□□ -2.35
VPS41P38959 FMP27YLR454W 7887 nt0.37□□□□□ -2.35
VPS41P38959 YBL100W-CYBL100W-C 120 nt0.34□□□□□ -2.36
VPS41P38959 snR50snR50 90 nt0.34□□□□□ -2.36
VPS41P38959 YOL014WYOL014W 375 nt0.33□□□□□ -2.36
VPS41P38959 YER090C-AYER090C-A 90 nt0.31□□□□□ -2.36
VPS41P38959 IQG1YPL242C 4488 nt0.3□□□□□ -2.36
VPS41P38959 YPL060C-AYPL060C-A 3315 nt0.29□□□□□ -2.36
VPS41P38959 YOL164W-AYOL164W-A 183 nt0.29□□□□□ -2.36
VPS41P38959 YML054C-AYML054C-A 159 nt0.27□□□□□ -2.37
VPS41P38959 tS(GCU)Q1tS(GCU)Q1 86 nt0.26□□□□□ -2.37
VPS41P38959 YHR180C-BYHR180C-B 105 nt0.26□□□□□ -2.37
VPS41P38959 YNL054W-BYNL054W-B 5250 nt0.26□□□□□ -2.37
VPS41P38959 ESP1YGR098C 4893 nt0.25□□□□□ -2.37
VPS41P38959 YOL013W-AYOL013W-A 192 nt0.25□□□□□ -2.37
VPS41P38959 YGR240C-AYGR240C-A 201 nt0.24□□□□□ -2.37
VPS41P38959 YDL247W-AYDL247W-A 75 nt0.23□□□□□ -2.37
VPS41P38959 snR47snR47 99 nt0.23□□□□□ -2.37
VPS41P38959 snR67snR67 82 nt0.2□□□□□ -2.38
VPS41P38959 snR128snR128 126 nt0.2□□□□□ -2.38
VPS41P38959 snR62snR62 100 nt0.19□□□□□ -2.38
VPS41P38959 SOV1YMR066W 2697 nt0.17□□□□□ -2.38
VPS41P38959 YDR034C-AYDR034C-A 177 nt0.14□□□□□ -2.39
VPS41P38959 RPL41AYDL184C 78 nt0.12□□□□□ -2.39
VPS41P38959 YER078W-AYER078W-A 165 nt0.12□□□□□ -2.39
VPS41P38959 THO2YNL139C 4794 nt0.11□□□□□ -2.39
VPS41P38959 YLL066W-BYLL066W-B 171 nt0.1□□□□□ -2.39
VPS41P38959 YML100W-AYML100W-A 174 nt0.1□□□□□ -2.39
VPS41P38959 snR45snR45 172 nt0.08□□□□□ -2.4
VPS41P38959 YBR296C-AYBR296C-A 120 nt0.08□□□□□ -2.4
VPS41P38959 YBR109W-AYBR109W-A 225 nt0.07□□□□□ -2.4
VPS41P38959 PAU9YBL108C-A 129 nt0.04□□□□□ -2.4
VPS41P38959 YKL225WYKL225W 348 nt-0.04□□□□□ -2.42
VPS41P38959 SKI7YOR076C 2244 nt-0.05□□□□□ -2.42
VPS41P38959 snR38snR38 95 nt-0.06□□□□□ -2.42
VPS41P38959 SBH2YER019C-A 267 nt-0.11□□□□□ -2.43
VPS41P38959 snR64snR64 101 nt-0.15□□□□□ -2.43
VPS41P38959 tA(UGC)QtA(UGC)Q 76 nt-0.16□□□□□ -2.44
VPS41P38959 YKL106C-AYKL106C-A 120 nt-0.17□□□□□ -2.44
VPS41P38959 YOR376W-AYOR376W-A 156 nt-0.3□□□□□ -2.46
VPS41P38959 snR161snR161 161 nt-0.33□□□□□ -2.46
VPS41P38959 YDL159W-AYDL159W-A 132 nt-0.34□□□□□ -2.46
VPS41P38959 snR53snR53 91 nt-0.34□□□□□ -2.46
VPS41P38959 YGR122C-AYGR122C-A 129 nt-0.35□□□□□ -2.47
VPS41P38959 YOR316C-AYOR316C-A 210 nt-0.41□□□□□ -2.48
VPS41P38959 URB1YKL014C 5295 nt-0.42□□□□□ -2.48
VPS41P38959 YDL114W-AYDL114W-A 114 nt-0.49□□□□□ -2.49
VPS41P38959 snR77snR77 88 nt-0.55□□□□□ -2.5
VPS41P38959 YJL113WYJL113W 4647 nt-0.6□□□□□ -2.5
Retrieved 100 of 7,029 protein–RNA pairs in 26.8 ms