Protein–RNA interactions for Protein: P23968

VMA16, V-type proton ATPase subunit c'', yeastyeast

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VMA16P23968 CSE1YGL238W 2883 nt0.37□□□□□ -2.35
VMA16P23968 tF(GAA)BtF(GAA)B 73 nt0.37□□□□□ -2.35
VMA16P23968 tF(GAA)FtF(GAA)F 73 nt0.37□□□□□ -2.35
VMA16P23968 tF(GAA)GtF(GAA)G 73 nt0.37□□□□□ -2.35
VMA16P23968 tF(GAA)H1tF(GAA)H1 73 nt0.37□□□□□ -2.35
VMA16P23968 tF(GAA)H2tF(GAA)H2 73 nt0.37□□□□□ -2.35
VMA16P23968 tF(GAA)MtF(GAA)M 73 nt0.37□□□□□ -2.35
VMA16P23968 tF(GAA)P1tF(GAA)P1 73 nt0.37□□□□□ -2.35
VMA16P23968 tF(GAA)P2tF(GAA)P2 73 nt0.37□□□□□ -2.35
VMA16P23968 BIR1YJR089W 2865 nt0.37□□□□□ -2.35
VMA16P23968 YGR146C-AYGR146C-A 162 nt0.34□□□□□ -2.36
VMA16P23968 YNL338WYNL338W 159 nt0.34□□□□□ -2.36
VMA16P23968 YOR225WYOR225W 330 nt0.33□□□□□ -2.36
VMA16P23968 YOR186C-AYOR186C-A 210 nt0.32□□□□□ -2.36
VMA16P23968 YBR099CYBR099C 384 nt0.32□□□□□ -2.36
VMA16P23968 YKL145W-AYKL145W-A 93 nt0.31□□□□□ -2.36
VMA16P23968 YNL067W-BYNL067W-B 141 nt0.3□□□□□ -2.36
VMA16P23968 YOL013W-AYOL013W-A 192 nt0.27□□□□□ -2.37
VMA16P23968 AI1Q0050 2505 nt0.26□□□□□ -2.37
VMA16P23968 SOV1YMR066W 2697 nt0.24□□□□□ -2.37
VMA16P23968 YOL014WYOL014W 375 nt0.23□□□□□ -2.37
VMA16P23968 YNL054W-BYNL054W-B 5250 nt0.23□□□□□ -2.37
VMA16P23968 EST1YLR233C 2100 nt0.21□□□□□ -2.38
VMA16P23968 YNL205CYNL205C 423 nt0.18□□□□□ -2.38
VMA16P23968 PMP2YEL017C-A 132 nt0.17□□□□□ -2.38
VMA16P23968 YJL077W-AYJL077W-A 87 nt0.17□□□□□ -2.38
VMA16P23968 YLR294CYLR294C 330 nt0.17□□□□□ -2.38
VMA16P23968 snR69snR69 101 nt0.16□□□□□ -2.38
VMA16P23968 SEC10YLR166C 2616 nt0.09□□□□□ -2.4
VMA16P23968 THO2YNL139C 4794 nt0.08□□□□□ -2.4
VMA16P23968 YCR095W-AYCR095W-A 159 nt0.07□□□□□ -2.4
VMA16P23968 SOM1YEL059C-A 225 nt0.07□□□□□ -2.4
VMA16P23968 YER078W-AYER078W-A 165 nt0.07□□□□□ -2.4
VMA16P23968 YGR164WYGR164W 336 nt0.07□□□□□ -2.4
VMA16P23968 RDS3YPR094W 324 nt0.06□□□□□ -2.4
VMA16P23968 YIL071W-AYIL071W-A 477 nt0.05□□□□□ -2.4
VMA16P23968 tD(GUC)QtD(GUC)Q 75 nt0.03□□□□□ -2.4
VMA16P23968 tQ(UUG)QtQ(UUG)Q 76 nt0.03□□□□□ -2.4
VMA16P23968 YNL266WYNL266W 420 nt0.02□□□□□ -2.41
VMA16P23968 snR128snR128 126 nt0.01□□□□□ -2.41
VMA16P23968 YCL001W-BYCL001W-B 255 nt-0.01□□□□□ -2.41
VMA16P23968 YBR178WYBR178W 375 nt-0.03□□□□□ -2.41
VMA16P23968 YER090C-AYER090C-A 90 nt-0.04□□□□□ -2.42
VMA16P23968 snR45snR45 172 nt-0.06□□□□□ -2.42
VMA16P23968 YLR286W-AYLR286W-A 135 nt-0.07□□□□□ -2.42
VMA16P23968 YBR196C-AYBR196C-A 150 nt-0.08□□□□□ -2.42
VMA16P23968 YML100W-AYML100W-A 174 nt-0.09□□□□□ -2.42
VMA16P23968 YDL159C-BYDL159C-B 177 nt-0.11□□□□□ -2.43
VMA16P23968 snR50snR50 90 nt-0.11□□□□□ -2.43
VMA16P23968 YNL170WYNL170W 396 nt-0.17□□□□□ -2.44
VMA16P23968 YLR299C-AYLR299C-A 93 nt-0.19□□□□□ -2.44
VMA16P23968 ATP8Q0080 147 nt-0.21□□□□□ -2.44
VMA16P23968 TFB5YDR079C-A 219 nt-0.28□□□□□ -2.45
VMA16P23968 SBH2YER019C-A 267 nt-0.28□□□□□ -2.45
VMA16P23968 snR67snR67 82 nt-0.29□□□□□ -2.46
VMA16P23968 tA(UGC)QtA(UGC)Q 76 nt-0.36□□□□□ -2.47
VMA16P23968 Q0092Q0092 141 nt-0.36□□□□□ -2.47
VMA16P23968 YML054C-AYML054C-A 159 nt-0.39□□□□□ -2.47
VMA16P23968 PAU9YBL108C-A 129 nt-0.39□□□□□ -2.47
VMA16P23968 YAL037C-AYAL037C-A 93 nt-0.4□□□□□ -2.47
VMA16P23968 YBL071C-BYBL071C-B 99 nt-0.4□□□□□ -2.47
VMA16P23968 YOL083C-AYOL083C-A 141 nt-0.41□□□□□ -2.48
VMA16P23968 SKI7YOR076C 2244 nt-0.42□□□□□ -2.48
VMA16P23968 YJL113WYJL113W 4647 nt-0.44□□□□□ -2.48
VMA16P23968 snR81snR81 201 nt-0.44□□□□□ -2.48
VMA16P23968 YHR180C-BYHR180C-B 105 nt-0.45□□□□□ -2.48
VMA16P23968 YNL103W-AYNL103W-A 90 nt-0.46□□□□□ -2.48
VMA16P23968 URB1YKL014C 5295 nt-0.46□□□□□ -2.48
VMA16P23968 snR61snR61 90 nt-0.5□□□□□ -2.49
VMA16P23968 YOL164W-AYOL164W-A 183 nt-0.51□□□□□ -2.49
VMA16P23968 YGL041C-BYGL041C-B 183 nt-0.57□□□□□ -2.5
VMA16P23968 YBR109W-AYBR109W-A 225 nt-0.6□□□□□ -2.51
VMA16P23968 YHL009W-BYHL009W-B 5409 nt-0.6□□□□□ -2.51
VMA16P23968 Q0143Q0143 153 nt-0.62□□□□□ -2.51
VMA16P23968 YGR240C-AYGR240C-A 201 nt-0.65□□□□□ -2.51
VMA16P23968 YBL100W-CYBL100W-C 120 nt-0.65□□□□□ -2.51
VMA16P23968 YBR296C-AYBR296C-A 120 nt-0.65□□□□□ -2.51
VMA16P23968 RPL41AYDL184C 78 nt-0.66□□□□□ -2.52
VMA16P23968 snR47snR47 99 nt-0.66□□□□□ -2.52
VMA16P23968 snR38snR38 95 nt-0.7□□□□□ -2.52
VMA16P23968 snR161snR161 161 nt-0.76□□□□□ -2.53
VMA16P23968 YOR376W-AYOR376W-A 156 nt-0.81□□□□□ -2.54
VMA16P23968 tS(GCU)Q1tS(GCU)Q1 86 nt-0.83□□□□□ -2.54
VMA16P23968 snR62snR62 100 nt-0.84□□□□□ -2.54
VMA16P23968 YKL106C-AYKL106C-A 120 nt-0.85□□□□□ -2.55
VMA16P23968 snR33snR33 183 nt-0.85□□□□□ -2.55
VMA16P23968 snR85snR85 171 nt-0.88□□□□□ -2.55
VMA16P23968 tT(UGU)G1tT(UGU)G1 72 nt-0.88□□□□□ -2.55
VMA16P23968 tT(UGU)G2tT(UGU)G2 72 nt-0.88□□□□□ -2.55
VMA16P23968 tT(UGU)PtT(UGU)P 72 nt-0.88□□□□□ -2.55
VMA16P23968 YMR326CYMR326C 309 nt-0.89□□□□□ -2.55
VMA16P23968 YDR034C-AYDR034C-A 177 nt-0.9□□□□□ -2.55
VMA16P23968 YKL225WYKL225W 348 nt-0.92□□□□□ -2.56
VMA16P23968 YHR217CYHR217C 462 nt-0.94□□□□□ -2.56
VMA16P23968 YOR316C-AYOR316C-A 210 nt-0.95□□□□□ -2.56
VMA16P23968 YBL109WYBL109W 336 nt-1.05□□□□□ -2.58
VMA16P23968 snR77snR77 88 nt-1.1□□□□□ -2.59
VMA16P23968 CDC65tQ(CUG)M 72 nt-1.15□□□□□ -2.59
VMA16P23968 YBR223W-AYBR223W-A 120 nt-1.17□□□□□ -2.6
VMA16P23968 snR64snR64 101 nt-1.19□□□□□ -2.6
Retrieved 100 of 7,029 protein–RNA pairs in 12.9 ms