Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smco4Q9JIS3 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smco4Q9JIS3 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smco4Q9JIS3 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Smco4Q9JIS3 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smco4Q9JIS3 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smco4Q9JIS3 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.23■□□□□ 0.67
Smco4Q9JIS3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smco4Q9JIS3 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smco4Q9JIS3 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smco4Q9JIS3 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Smco4Q9JIS3 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smco4Q9JIS3 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smco4Q9JIS3 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smco4Q9JIS3 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smco4Q9JIS3 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smco4Q9JIS3 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smco4Q9JIS3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Smco4Q9JIS3 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smco4Q9JIS3 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Smco4Q9JIS3 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Smco4Q9JIS3 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
Smco4Q9JIS3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smco4Q9JIS3 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Smco4Q9JIS3 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smco4Q9JIS3 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smco4Q9JIS3 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Smco4Q9JIS3 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smco4Q9JIS3 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Smco4Q9JIS3 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Smco4Q9JIS3 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smco4Q9JIS3 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smco4Q9JIS3 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC19.15■□□□□ 0.66
Smco4Q9JIS3 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smco4Q9JIS3 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smco4Q9JIS3 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC19.15■□□□□ 0.66
Smco4Q9JIS3 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Smco4Q9JIS3 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Smco4Q9JIS3 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smco4Q9JIS3 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smco4Q9JIS3 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
Smco4Q9JIS3 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smco4Q9JIS3 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Smco4Q9JIS3 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smco4Q9JIS3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smco4Q9JIS3 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smco4Q9JIS3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC19.12■□□□□ 0.65
Smco4Q9JIS3 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smco4Q9JIS3 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smco4Q9JIS3 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Smco4Q9JIS3 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smco4Q9JIS3 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smco4Q9JIS3 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Smco4Q9JIS3 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smco4Q9JIS3 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smco4Q9JIS3 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smco4Q9JIS3 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smco4Q9JIS3 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.09■□□□□ 0.65
Smco4Q9JIS3 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smco4Q9JIS3 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Smco4Q9JIS3 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Smco4Q9JIS3 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Smco4Q9JIS3 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.65
Smco4Q9JIS3 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Smco4Q9JIS3 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smco4Q9JIS3 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Smco4Q9JIS3 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Smco4Q9JIS3 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smco4Q9JIS3 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smco4Q9JIS3 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smco4Q9JIS3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Smco4Q9JIS3 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Smco4Q9JIS3 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smco4Q9JIS3 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smco4Q9JIS3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Smco4Q9JIS3 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Smco4Q9JIS3 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.02■□□□□ 0.64
Smco4Q9JIS3 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.02■□□□□ 0.64
Smco4Q9JIS3 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Smco4Q9JIS3 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Smco4Q9JIS3 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Smco4Q9JIS3 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smco4Q9JIS3 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Smco4Q9JIS3 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
Smco4Q9JIS3 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Smco4Q9JIS3 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Smco4Q9JIS3 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Smco4Q9JIS3 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Smco4Q9JIS3 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC19■□□□□ 0.63
Smco4Q9JIS3 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19■□□□□ 0.63
Smco4Q9JIS3 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
Smco4Q9JIS3 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 71.6 ms