Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Rpa1Q8VEE4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Rpa1Q8VEE4 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Rpa1Q8VEE4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC23.88■■□□□ 1.41
Rpa1Q8VEE4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Rpa1Q8VEE4 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Rpa1Q8VEE4 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Rpa1Q8VEE4 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Rpa1Q8VEE4 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Rpa1Q8VEE4 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Rpa1Q8VEE4 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Rpa1Q8VEE4 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Rpa1Q8VEE4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Rpa1Q8VEE4 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Rpa1Q8VEE4 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Rpa1Q8VEE4 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Rpa1Q8VEE4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC23.84■■□□□ 1.41
Rpa1Q8VEE4 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Rpa1Q8VEE4 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Rpa1Q8VEE4 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Rpa1Q8VEE4 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Rpa1Q8VEE4 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Rpa1Q8VEE4 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Rpa1Q8VEE4 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Rpa1Q8VEE4 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Rpa1Q8VEE4 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Rpa1Q8VEE4 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Rpa1Q8VEE4 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Rpa1Q8VEE4 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Rpa1Q8VEE4 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Rpa1Q8VEE4 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Rpa1Q8VEE4 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Rpa1Q8VEE4 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Rpa1Q8VEE4 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Rpa1Q8VEE4 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Rpa1Q8VEE4 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Rpa1Q8VEE4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Rpa1Q8VEE4 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Rpa1Q8VEE4 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Rpa1Q8VEE4 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Rpa1Q8VEE4 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Rpa1Q8VEE4 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Rpa1Q8VEE4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Rpa1Q8VEE4 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Rpa1Q8VEE4 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC23.73■■□□□ 1.39
Rpa1Q8VEE4 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC23.73■■□□□ 1.39
Rpa1Q8VEE4 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Rpa1Q8VEE4 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Rpa1Q8VEE4 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.72■■□□□ 1.39
Rpa1Q8VEE4 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Rpa1Q8VEE4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC23.72■■□□□ 1.39
Rpa1Q8VEE4 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Rpa1Q8VEE4 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Rpa1Q8VEE4 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
Rpa1Q8VEE4 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Rpa1Q8VEE4 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Rpa1Q8VEE4 Gm17641-201ENSMUST00000166328 2350 ntBASIC23.7■■□□□ 1.38
Rpa1Q8VEE4 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Rpa1Q8VEE4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
Rpa1Q8VEE4 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Rpa1Q8VEE4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Rpa1Q8VEE4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Rpa1Q8VEE4 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Rpa1Q8VEE4 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Rpa1Q8VEE4 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Rpa1Q8VEE4 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Rpa1Q8VEE4 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Rpa1Q8VEE4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC23.67■■□□□ 1.38
Rpa1Q8VEE4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Rpa1Q8VEE4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Rpa1Q8VEE4 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Rpa1Q8VEE4 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC23.66■■□□□ 1.38
Rpa1Q8VEE4 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Rpa1Q8VEE4 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Rpa1Q8VEE4 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Rpa1Q8VEE4 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Rpa1Q8VEE4 Gm24804-201ENSMUST00000174982 85 ntBASIC23.65■■□□□ 1.38
Rpa1Q8VEE4 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Rpa1Q8VEE4 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC23.64■■□□□ 1.38
Rpa1Q8VEE4 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Rpa1Q8VEE4 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Rpa1Q8VEE4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Rpa1Q8VEE4 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Rpa1Q8VEE4 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Rpa1Q8VEE4 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
Rpa1Q8VEE4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Rpa1Q8VEE4 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Rpa1Q8VEE4 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Rpa1Q8VEE4 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Rpa1Q8VEE4 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Rpa1Q8VEE4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Rpa1Q8VEE4 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC23.6■■□□□ 1.37
Rpa1Q8VEE4 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Rpa1Q8VEE4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Rpa1Q8VEE4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Rpa1Q8VEE4 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Rpa1Q8VEE4 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Rpa1Q8VEE4 Il17rd-202ENSMUST00000223942 2186 ntBASIC23.58■■□□□ 1.36
Rpa1Q8VEE4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
Rpa1Q8VEE4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms