Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC28.71■■■□□ 2.19
Trim56Q80VI1 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Trim56Q80VI1 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC28.69■■■□□ 2.18
Trim56Q80VI1 Gm30023-201ENSMUST00000197970 889 ntBASIC28.68■■■□□ 2.18
Trim56Q80VI1 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC28.66■■■□□ 2.18
Trim56Q80VI1 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC28.65■■■□□ 2.18
Trim56Q80VI1 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Trim56Q80VI1 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
Trim56Q80VI1 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Trim56Q80VI1 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC28.64■■■□□ 2.17
Trim56Q80VI1 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
Trim56Q80VI1 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
Trim56Q80VI1 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
Trim56Q80VI1 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Trim56Q80VI1 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
Trim56Q80VI1 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
Trim56Q80VI1 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC28.6■■■□□ 2.17
Trim56Q80VI1 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Trim56Q80VI1 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Trim56Q80VI1 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Trim56Q80VI1 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Trim56Q80VI1 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
Trim56Q80VI1 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Trim56Q80VI1 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Trim56Q80VI1 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Trim56Q80VI1 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Trim56Q80VI1 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
Trim56Q80VI1 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
Trim56Q80VI1 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Trim56Q80VI1 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC28.54■■■□□ 2.16
Trim56Q80VI1 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC28.54■■■□□ 2.16
Trim56Q80VI1 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
Trim56Q80VI1 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Trim56Q80VI1 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC28.53■■■□□ 2.16
Trim56Q80VI1 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Trim56Q80VI1 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Trim56Q80VI1 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.16
Trim56Q80VI1 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.15
Trim56Q80VI1 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Trim56Q80VI1 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC28.51■■■□□ 2.15
Trim56Q80VI1 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC28.5■■■□□ 2.15
Trim56Q80VI1 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC28.5■■■□□ 2.15
Trim56Q80VI1 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Trim56Q80VI1 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Trim56Q80VI1 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
Trim56Q80VI1 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC28.47■■■□□ 2.15
Trim56Q80VI1 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Trim56Q80VI1 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Trim56Q80VI1 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.47■■■□□ 2.15
Trim56Q80VI1 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Trim56Q80VI1 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC28.46■■■□□ 2.15
Trim56Q80VI1 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Trim56Q80VI1 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC28.45■■■□□ 2.14
Trim56Q80VI1 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Trim56Q80VI1 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC28.44■■■□□ 2.14
Trim56Q80VI1 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Trim56Q80VI1 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Trim56Q80VI1 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Trim56Q80VI1 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Trim56Q80VI1 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Trim56Q80VI1 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.42■■■□□ 2.14
Trim56Q80VI1 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
Trim56Q80VI1 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Trim56Q80VI1 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC28.4■■■□□ 2.14
Trim56Q80VI1 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC28.38■■■□□ 2.13
Trim56Q80VI1 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Trim56Q80VI1 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Trim56Q80VI1 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
Trim56Q80VI1 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Trim56Q80VI1 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Trim56Q80VI1 Fezf2-202ENSMUST00000224023 1917 ntBASIC28.36■■■□□ 2.13
Trim56Q80VI1 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Trim56Q80VI1 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Trim56Q80VI1 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Trim56Q80VI1 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Trim56Q80VI1 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Trim56Q80VI1 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
Trim56Q80VI1 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC28.33■■■□□ 2.12
Trim56Q80VI1 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
Trim56Q80VI1 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Trim56Q80VI1 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Trim56Q80VI1 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
Trim56Q80VI1 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Trim56Q80VI1 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC28.31■■■□□ 2.12
Trim56Q80VI1 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Trim56Q80VI1 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Trim56Q80VI1 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.29■■■□□ 2.12
Trim56Q80VI1 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
Trim56Q80VI1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Trim56Q80VI1 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Trim56Q80VI1 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
Trim56Q80VI1 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC28.28■■■□□ 2.12
Trim56Q80VI1 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Trim56Q80VI1 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Trim56Q80VI1 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Trim56Q80VI1 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Trim56Q80VI1 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Trim56Q80VI1 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Trim56Q80VI1 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Trim56Q80VI1 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms