Protein–RNA interactions for Protein: Q78T54

Vma21, Vacuolar ATPase assembly integral membrane protein Vma21, mousemouse

Predictions only

Length 101 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vma21Q78T54 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Vma21Q78T54 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.35■□□□□ 0.69
Vma21Q78T54 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Vma21Q78T54 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vma21Q78T54 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vma21Q78T54 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Vma21Q78T54 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vma21Q78T54 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Vma21Q78T54 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vma21Q78T54 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vma21Q78T54 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Vma21Q78T54 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vma21Q78T54 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Vma21Q78T54 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vma21Q78T54 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vma21Q78T54 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Vma21Q78T54 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vma21Q78T54 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vma21Q78T54 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Vma21Q78T54 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vma21Q78T54 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vma21Q78T54 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Vma21Q78T54 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vma21Q78T54 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.29■□□□□ 0.68
Vma21Q78T54 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vma21Q78T54 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vma21Q78T54 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vma21Q78T54 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vma21Q78T54 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vma21Q78T54 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vma21Q78T54 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Vma21Q78T54 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vma21Q78T54 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Vma21Q78T54 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
Vma21Q78T54 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.25■□□□□ 0.67
Vma21Q78T54 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vma21Q78T54 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vma21Q78T54 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
Vma21Q78T54 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Vma21Q78T54 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vma21Q78T54 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vma21Q78T54 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vma21Q78T54 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vma21Q78T54 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vma21Q78T54 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.22■□□□□ 0.67
Vma21Q78T54 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vma21Q78T54 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vma21Q78T54 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
Vma21Q78T54 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Vma21Q78T54 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Vma21Q78T54 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.2■□□□□ 0.66
Vma21Q78T54 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Vma21Q78T54 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vma21Q78T54 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Vma21Q78T54 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vma21Q78T54 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vma21Q78T54 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vma21Q78T54 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Vma21Q78T54 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Vma21Q78T54 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vma21Q78T54 Gm43863-201ENSMUST00000203822 1192 ntBASIC19.18■□□□□ 0.66
Vma21Q78T54 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vma21Q78T54 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Vma21Q78T54 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vma21Q78T54 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC19.17■□□□□ 0.66
Vma21Q78T54 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vma21Q78T54 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vma21Q78T54 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vma21Q78T54 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vma21Q78T54 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vma21Q78T54 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vma21Q78T54 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
Vma21Q78T54 AC157572.2-201ENSMUST00000226970 908 ntBASIC19.15■□□□□ 0.66
Vma21Q78T54 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Vma21Q78T54 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Vma21Q78T54 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Vma21Q78T54 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC19.14■□□□□ 0.65
Vma21Q78T54 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC19.14■□□□□ 0.65
Vma21Q78T54 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vma21Q78T54 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vma21Q78T54 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.13■□□□□ 0.65
Vma21Q78T54 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vma21Q78T54 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vma21Q78T54 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vma21Q78T54 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Vma21Q78T54 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vma21Q78T54 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vma21Q78T54 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Vma21Q78T54 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vma21Q78T54 Zfp131-205ENSMUST00000223812 663 ntBASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 116 ms