Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav6d-4Q5R1I0 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trav6d-4Q5R1I0 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trav6d-4Q5R1I0 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trav6d-4Q5R1I0 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.26■□□□□ 0.83
Trav6d-4Q5R1I0 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trav6d-4Q5R1I0 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav6d-4Q5R1I0 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav6d-4Q5R1I0 Gm30023-201ENSMUST00000197970 889 ntBASIC20.24■□□□□ 0.83
Trav6d-4Q5R1I0 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav6d-4Q5R1I0 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Trav6d-4Q5R1I0 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trav6d-4Q5R1I0 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trav6d-4Q5R1I0 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.23■□□□□ 0.83
Trav6d-4Q5R1I0 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav6d-4Q5R1I0 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6d-4Q5R1I0 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.21■□□□□ 0.83
Trav6d-4Q5R1I0 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
Trav6d-4Q5R1I0 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6d-4Q5R1I0 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6d-4Q5R1I0 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.2■□□□□ 0.82
Trav6d-4Q5R1I0 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.2■□□□□ 0.82
Trav6d-4Q5R1I0 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.19■□□□□ 0.82
Trav6d-4Q5R1I0 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC20.19■□□□□ 0.82
Trav6d-4Q5R1I0 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Trav6d-4Q5R1I0 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6d-4Q5R1I0 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
Trav6d-4Q5R1I0 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6d-4Q5R1I0 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6d-4Q5R1I0 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6d-4Q5R1I0 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.18■□□□□ 0.82
Trav6d-4Q5R1I0 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6d-4Q5R1I0 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav6d-4Q5R1I0 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav6d-4Q5R1I0 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav6d-4Q5R1I0 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav6d-4Q5R1I0 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav6d-4Q5R1I0 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav6d-4Q5R1I0 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav6d-4Q5R1I0 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trav6d-4Q5R1I0 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.14■□□□□ 0.81
Trav6d-4Q5R1I0 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.14■□□□□ 0.81
Trav6d-4Q5R1I0 Amer2-203ENSMUST00000225247 2662 ntBASIC20.13■□□□□ 0.81
Trav6d-4Q5R1I0 Gm7432-201ENSMUST00000210343 879 ntBASIC20.13■□□□□ 0.81
Trav6d-4Q5R1I0 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6d-4Q5R1I0 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6d-4Q5R1I0 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Trav6d-4Q5R1I0 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav6d-4Q5R1I0 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trav6d-4Q5R1I0 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6d-4Q5R1I0 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.11■□□□□ 0.81
Trav6d-4Q5R1I0 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6d-4Q5R1I0 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trav6d-4Q5R1I0 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav6d-4Q5R1I0 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav6d-4Q5R1I0 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav6d-4Q5R1I0 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav6d-4Q5R1I0 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trav6d-4Q5R1I0 Gm5987-201ENSMUST00000196433 1151 ntBASIC20.08■□□□□ 0.81
Trav6d-4Q5R1I0 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav6d-4Q5R1I0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Trav6d-4Q5R1I0 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav6d-4Q5R1I0 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav6d-4Q5R1I0 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
Trav6d-4Q5R1I0 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20.07■□□□□ 0.8
Trav6d-4Q5R1I0 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav6d-4Q5R1I0 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav6d-4Q5R1I0 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Trav6d-4Q5R1I0 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6d-4Q5R1I0 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6d-4Q5R1I0 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Trav6d-4Q5R1I0 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav6d-4Q5R1I0 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav6d-4Q5R1I0 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
Trav6d-4Q5R1I0 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.04■□□□□ 0.8
Trav6d-4Q5R1I0 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Trav6d-4Q5R1I0 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Trav6d-4Q5R1I0 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC20.03■□□□□ 0.8
Trav6d-4Q5R1I0 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav6d-4Q5R1I0 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Trav6d-4Q5R1I0 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trav6d-4Q5R1I0 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.01■□□□□ 0.79
Trav6d-4Q5R1I0 Gm11599-201ENSMUST00000118720 878 ntBASIC20.01■□□□□ 0.79
Trav6d-4Q5R1I0 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.01■□□□□ 0.79
Trav6d-4Q5R1I0 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav6d-4Q5R1I0 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6d-4Q5R1I0 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6d-4Q5R1I0 Particl-201ENSMUST00000205370 1560 ntBASIC19.99■□□□□ 0.79
Trav6d-4Q5R1I0 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6d-4Q5R1I0 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6d-4Q5R1I0 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trav6d-4Q5R1I0 AC131739.1-201ENSMUST00000221692 1245 ntBASIC19.97■□□□□ 0.79
Trav6d-4Q5R1I0 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav6d-4Q5R1I0 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC19.97■□□□□ 0.79
Trav6d-4Q5R1I0 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Trav6d-4Q5R1I0 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Trav6d-4Q5R1I0 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav6d-4Q5R1I0 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6d-4Q5R1I0 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6d-4Q5R1I0 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms