Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Limch1Q3UH68 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Limch1Q3UH68 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Limch1Q3UH68 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Limch1Q3UH68 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Limch1Q3UH68 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC28.17■■■□□ 2.1
Limch1Q3UH68 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Limch1Q3UH68 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
Limch1Q3UH68 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Limch1Q3UH68 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Limch1Q3UH68 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Limch1Q3UH68 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Limch1Q3UH68 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
Limch1Q3UH68 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Limch1Q3UH68 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Limch1Q3UH68 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
Limch1Q3UH68 Gm42809-201ENSMUST00000198429 1138 ntBASIC28.09■■■□□ 2.09
Limch1Q3UH68 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC28.08■■■□□ 2.09
Limch1Q3UH68 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
Limch1Q3UH68 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
Limch1Q3UH68 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Limch1Q3UH68 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Limch1Q3UH68 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
Limch1Q3UH68 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC28.05■■■□□ 2.08
Limch1Q3UH68 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Limch1Q3UH68 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
Limch1Q3UH68 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Limch1Q3UH68 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC28.02■■■□□ 2.08
Limch1Q3UH68 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Limch1Q3UH68 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.01■■■□□ 2.07
Limch1Q3UH68 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC28.01■■■□□ 2.07
Limch1Q3UH68 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC28■■■□□ 2.07
Limch1Q3UH68 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Limch1Q3UH68 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Limch1Q3UH68 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC27.99■■■□□ 2.07
Limch1Q3UH68 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC27.98■■■□□ 2.07
Limch1Q3UH68 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Limch1Q3UH68 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Limch1Q3UH68 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Limch1Q3UH68 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC27.98■■■□□ 2.07
Limch1Q3UH68 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Limch1Q3UH68 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
Limch1Q3UH68 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Limch1Q3UH68 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC27.96■■■□□ 2.07
Limch1Q3UH68 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Limch1Q3UH68 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
Limch1Q3UH68 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Limch1Q3UH68 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Limch1Q3UH68 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC27.94■■■□□ 2.06
Limch1Q3UH68 Nkain2-201ENSMUST00000092602 558 ntBASIC27.93■■■□□ 2.06
Limch1Q3UH68 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Limch1Q3UH68 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC27.92■■■□□ 2.06
Limch1Q3UH68 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC27.92■■■□□ 2.06
Limch1Q3UH68 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Limch1Q3UH68 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Limch1Q3UH68 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC27.91■■■□□ 2.06
Limch1Q3UH68 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Limch1Q3UH68 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Limch1Q3UH68 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
Limch1Q3UH68 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Limch1Q3UH68 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Limch1Q3UH68 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
Limch1Q3UH68 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC27.89■■■□□ 2.05
Limch1Q3UH68 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC27.88■■■□□ 2.05
Limch1Q3UH68 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC27.88■■■□□ 2.05
Limch1Q3UH68 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
Limch1Q3UH68 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC27.87■■■□□ 2.05
Limch1Q3UH68 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC27.87■■■□□ 2.05
Limch1Q3UH68 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC27.85■■■□□ 2.05
Limch1Q3UH68 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC27.84■■■□□ 2.05
Limch1Q3UH68 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Limch1Q3UH68 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
Limch1Q3UH68 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC27.83■■■□□ 2.04
Limch1Q3UH68 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Limch1Q3UH68 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC27.82■■■□□ 2.04
Limch1Q3UH68 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
Limch1Q3UH68 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Limch1Q3UH68 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC27.82■■■□□ 2.04
Limch1Q3UH68 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
Limch1Q3UH68 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Limch1Q3UH68 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
Limch1Q3UH68 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Limch1Q3UH68 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Limch1Q3UH68 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC27.8■■■□□ 2.04
Limch1Q3UH68 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Limch1Q3UH68 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Limch1Q3UH68 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Limch1Q3UH68 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Limch1Q3UH68 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Limch1Q3UH68 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
Limch1Q3UH68 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC27.79■■■□□ 2.04
Limch1Q3UH68 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
Limch1Q3UH68 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Limch1Q3UH68 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Limch1Q3UH68 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Limch1Q3UH68 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Limch1Q3UH68 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC27.77■■■□□ 2.04
Limch1Q3UH68 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Limch1Q3UH68 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
Limch1Q3UH68 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms