Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 FUN14YAL008W 597 nt9.35□□□□□ -0.91
SSL2Q00578 APS2YJR058C 444 nt9.35□□□□□ -0.91
SSL2Q00578 CDD1YLR245C 429 nt9.35□□□□□ -0.91
SSL2Q00578 FTH1YBR207W 1398 nt9.35□□□□□ -0.91
SSL2Q00578 YGR139WYGR139W 339 nt9.34□□□□□ -0.91
SSL2Q00578 EMC3YKL207W 762 nt9.34□□□□□ -0.91
SSL2Q00578 YEL008WYEL008W 381 nt9.33□□□□□ -0.92
SSL2Q00578 SBP1YHL034C 885 nt9.33□□□□□ -0.92
SSL2Q00578 NAS2YIL007C 663 nt9.33□□□□□ -0.92
SSL2Q00578 MDL2YPL270W 2322 nt9.33□□□□□ -0.92
SSL2Q00578 YMC2YBR104W 990 nt9.31□□□□□ -0.92
SSL2Q00578 SRP54YPR088C 1626 nt9.31□□□□□ -0.92
SSL2Q00578 POT1YIL160C 1254 nt9.3□□□□□ -0.92
SSL2Q00578 ABP1YCR088W 1779 nt9.29□□□□□ -0.92
SSL2Q00578 DUS3YLR401C 2007 nt9.28□□□□□ -0.92
SSL2Q00578 AAC3YBR085W 924 nt9.28□□□□□ -0.92
SSL2Q00578 snR86snR86 1004 nt9.27□□□□□ -0.93
SSL2Q00578 LEU2YCL018W 1095 nt9.27□□□□□ -0.93
SSL2Q00578 REX2YLR059C 810 nt9.25□□□□□ -0.93
SSL2Q00578 PTC6YCR079W 1329 nt9.25□□□□□ -0.93
SSL2Q00578 GAS1YMR307W 1680 nt9.24□□□□□ -0.93
SSL2Q00578 snR4snR4 186 nt9.24□□□□□ -0.93
SSL2Q00578 TPN1YGL186C 1740 nt9.24□□□□□ -0.93
SSL2Q00578 MRS4YKR052C 915 nt9.23□□□□□ -0.93
SSL2Q00578 SPE2YOL052C 1191 nt9.23□□□□□ -0.93
SSL2Q00578 ORT1YOR130C 879 nt9.23□□□□□ -0.93
SSL2Q00578 YMR210WYMR210W 1350 nt9.23□□□□□ -0.93
SSL2Q00578 TUB4YLR212C 1422 nt9.22□□□□□ -0.93
SSL2Q00578 TAF13YML098W 504 nt9.21□□□□□ -0.94
SSL2Q00578 LEA1YPL213W 717 nt9.21□□□□□ -0.94
SSL2Q00578 YLR349WYLR349W 507 nt9.2□□□□□ -0.94
SSL2Q00578 GTB1YDR221W 2109 nt9.19□□□□□ -0.94
SSL2Q00578 THP3YPR045C 1413 nt9.18□□□□□ -0.94
SSL2Q00578 MEP1YGR121C 1479 nt9.17□□□□□ -0.94
SSL2Q00578 RAD51YER095W 1203 nt9.16□□□□□ -0.94
SSL2Q00578 TMS1YDR105C 1422 nt9.15□□□□□ -0.94
SSL2Q00578 YBR056WYBR056W 1506 nt9.15□□□□□ -0.95
SSL2Q00578 PHB2YGR231C 933 nt9.14□□□□□ -0.95
SSL2Q00578 STE4YOR212W 1272 nt9.14□□□□□ -0.95
SSL2Q00578 FIT1YDR534C 1587 nt9.14□□□□□ -0.95
SSL2Q00578 MCM5YLR274W 2328 nt9.14□□□□□ -0.95
SSL2Q00578 VBA3YCL069W 1377 nt9.13□□□□□ -0.95
SSL2Q00578 SDS24YBR214W 1584 nt9.13□□□□□ -0.95
SSL2Q00578 ILV2YMR108W 2064 nt9.12□□□□□ -0.95
SSL2Q00578 YKR012CYKR012C 378 nt9.12□□□□□ -0.95
SSL2Q00578 GSF2YML048W 1212 nt9.12□□□□□ -0.95
SSL2Q00578 HIS3YOR202W 663 nt9.12□□□□□ -0.95
SSL2Q00578 ESBP6YNL125C 2022 nt9.12□□□□□ -0.95
SSL2Q00578 ADH3YMR083W 1128 nt9.11□□□□□ -0.95
SSL2Q00578 POP2YNR052C 1302 nt9.1□□□□□ -0.95
SSL2Q00578 LYS20YDL182W 1287 nt9.1□□□□□ -0.95
SSL2Q00578 YDR510C-AYDR510C-A 117 nt9.1□□□□□ -0.95
SSL2Q00578 YPT11YNL304W 1254 nt9.08□□□□□ -0.96
SSL2Q00578 PAR32YDL173W 888 nt9.07□□□□□ -0.96
SSL2Q00578 UFD1YGR048W 1086 nt9.07□□□□□ -0.96
SSL2Q00578 CPD1YGR247W 720 nt9.07□□□□□ -0.96
SSL2Q00578 FSH2YMR222C 672 nt9.07□□□□□ -0.96
SSL2Q00578 KRE1YNL322C 942 nt9.06□□□□□ -0.96
SSL2Q00578 MRN1YPL184C 1839 nt9.05□□□□□ -0.96
SSL2Q00578 YJR149WYJR149W 1215 nt9.05□□□□□ -0.96
SSL2Q00578 YRF1-2YER190W 5046 nt9.05□□□□□ -0.96
SSL2Q00578 DIA4YHR011W 1341 nt9.05□□□□□ -0.96
SSL2Q00578 YJL009WYJL009W 327 nt9.04□□□□□ -0.96
SSL2Q00578 PGC1YPL206C 966 nt9.03□□□□□ -0.96
SSL2Q00578 ADE16YLR028C 1776 nt9.03□□□□□ -0.96
SSL2Q00578 RFC1YOR217W 2586 nt9.03□□□□□ -0.96
SSL2Q00578 IGD1YFR017C 588 nt9.02□□□□□ -0.97
SSL2Q00578 YFR020WYFR020W 699 nt9.02□□□□□ -0.97
SSL2Q00578 RNA170RNA170 169 nt9.02□□□□□ -0.97
SSL2Q00578 DIP5YPL265W 1827 nt9.01□□□□□ -0.97
SSL2Q00578 PAU5YFL020C 369 nt9.01□□□□□ -0.97
SSL2Q00578 GAL2YLR081W 1725 nt9.01□□□□□ -0.97
SSL2Q00578 PMT7YDR307W 1989 nt8.99□□□□□ -0.97
SSL2Q00578 LRO1YNR008W 1986 nt8.99□□□□□ -0.97
SSL2Q00578 INO1YJL153C 1602 nt8.98□□□□□ -0.97
SSL2Q00578 BUD31YCR063W 474 nt8.97□□□□□ -0.97
SSL2Q00578 BUB2YMR055C 921 nt8.97□□□□□ -0.97
SSL2Q00578 HSV2YGR223C 1347 nt8.97□□□□□ -0.97
SSL2Q00578 PFS2YNL317W 1398 nt8.97□□□□□ -0.97
SSL2Q00578 WSC4YHL028W 1818 nt8.96□□□□□ -0.97
SSL2Q00578 GLY1YEL046C 1164 nt8.95□□□□□ -0.98
SSL2Q00578 MDH2YOL126C 1134 nt8.95□□□□□ -0.98
SSL2Q00578 MAS1YLR163C 1389 nt8.95□□□□□ -0.98
SSL2Q00578 NDE2YDL085W 1638 nt8.94□□□□□ -0.98
SSL2Q00578 DTR1YBR180W 1719 nt8.94□□□□□ -0.98
SSL2Q00578 ADH7YCR105W 1086 nt8.94□□□□□ -0.98
SSL2Q00578 MOB1YIL106W 945 nt8.94□□□□□ -0.98
SSL2Q00578 EHT1YBR177C 1356 nt8.94□□□□□ -0.98
SSL2Q00578 MET13YGL125W 1803 nt8.94□□□□□ -0.98
SSL2Q00578 tA(AGC)DtA(AGC)D 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)FtA(AGC)F 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)GtA(AGC)G 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)HtA(AGC)H 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)JtA(AGC)J 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)K1tA(AGC)K1 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)K2tA(AGC)K2 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)LtA(AGC)L 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)M1tA(AGC)M1 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)M2tA(AGC)M2 73 nt8.93□□□□□ -0.98
SSL2Q00578 tA(AGC)PtA(AGC)P 73 nt8.93□□□□□ -0.98
Retrieved 100 of 7,029 protein–RNA pairs in 21.5 ms