Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 TAF13YML098W 504 nt9.32□□□□□ -0.92
MSH3P25336 POT1YIL160C 1254 nt9.31□□□□□ -0.92
MSH3P25336 FTH1YBR207W 1398 nt9.31□□□□□ -0.92
MSH3P25336 KGD2YDR148C 1392 nt9.3□□□□□ -0.92
MSH3P25336 tE(CUC)DtE(CUC)D 72 nt9.3□□□□□ -0.92
MSH3P25336 tE(CUC)ItE(CUC)I 72 nt9.3□□□□□ -0.92
MSH3P25336 BUR6YER159C 429 nt9.3□□□□□ -0.92
MSH3P25336 YKL053WYKL053W 375 nt9.3□□□□□ -0.92
MSH3P25336 MIM1YOL026C 342 nt9.3□□□□□ -0.92
MSH3P25336 tD(GUC)BtD(GUC)B 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)DtD(GUC)D 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)G1tD(GUC)G1 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)G2tD(GUC)G2 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)I1tD(GUC)I1 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)I2tD(GUC)I2 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)J1tD(GUC)J1 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)J2tD(GUC)J2 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)J3tD(GUC)J3 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)J4tD(GUC)J4 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)KtD(GUC)K 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)L1tD(GUC)L1 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)L2tD(GUC)L2 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)MtD(GUC)M 72 nt9.29□□□□□ -0.92
MSH3P25336 tD(GUC)OtD(GUC)O 72 nt9.29□□□□□ -0.92
MSH3P25336 ENO2YHR174W 1314 nt9.29□□□□□ -0.92
MSH3P25336 NPP2YEL016C 1482 nt9.28□□□□□ -0.92
MSH3P25336 THI6YPL214C 1623 nt9.28□□□□□ -0.92
MSH3P25336 YLR349WYLR349W 507 nt9.28□□□□□ -0.92
MSH3P25336 ADH7YCR105W 1086 nt9.27□□□□□ -0.93
MSH3P25336 YDR467CYDR467C 327 nt9.27□□□□□ -0.93
MSH3P25336 DUS3YLR401C 2007 nt9.27□□□□□ -0.93
MSH3P25336 MET30YIL046W 1923 nt9.27□□□□□ -0.93
MSH3P25336 YNL190WYNL190W 615 nt9.26□□□□□ -0.93
MSH3P25336 SAN1YDR143C 1833 nt9.26□□□□□ -0.93
MSH3P25336 ADE5,7YGL234W 2409 nt9.25□□□□□ -0.93
MSH3P25336 RAD51YER095W 1203 nt9.25□□□□□ -0.93
MSH3P25336 NIF3YGL221C 867 nt9.25□□□□□ -0.93
MSH3P25336 HBS1YKR084C 1836 nt9.25□□□□□ -0.93
MSH3P25336 LAS17YOR181W 1902 nt9.25□□□□□ -0.93
MSH3P25336 TPC1YGR096W 945 nt9.24□□□□□ -0.93
MSH3P25336 GPM1YKL152C 744 nt9.24□□□□□ -0.93
MSH3P25336 NSG2YNL156C 900 nt9.24□□□□□ -0.93
MSH3P25336 THI3YDL080C 1830 nt9.24□□□□□ -0.93
MSH3P25336 PAU15YIR041W 375 nt9.23□□□□□ -0.93
MSH3P25336 YNL067W-AYNL067W-A 147 nt9.23□□□□□ -0.93
MSH3P25336 FET5YFL041W 1869 nt9.23□□□□□ -0.93
MSH3P25336 LEU2YCL018W 1095 nt9.22□□□□□ -0.93
MSH3P25336 TUB4YLR212C 1422 nt9.22□□□□□ -0.93
MSH3P25336 GSF2YML048W 1212 nt9.21□□□□□ -0.94
MSH3P25336 YMR316C-BYMR316C-B 309 nt9.21□□□□□ -0.94
MSH3P25336 RSC4YKR008W 1878 nt9.21□□□□□ -0.94
MSH3P25336 CPD1YGR247W 720 nt9.2□□□□□ -0.94
MSH3P25336 APS2YJR058C 444 nt9.2□□□□□ -0.94
MSH3P25336 YTH1YPR107C 627 nt9.2□□□□□ -0.94
MSH3P25336 SBP1YHL034C 885 nt9.19□□□□□ -0.94
MSH3P25336 YBL095WYBL095W 813 nt9.19□□□□□ -0.94
MSH3P25336 NAM8YHR086W 1572 nt9.19□□□□□ -0.94
MSH3P25336 GGA2YHR108W 1758 nt9.19□□□□□ -0.94
MSH3P25336 PMA2YPL036W 2844 nt9.18□□□□□ -0.94
MSH3P25336 RTG2YGL252C 1767 nt9.18□□□□□ -0.94
MSH3P25336 YLR173WYLR173W 1827 nt9.18□□□□□ -0.94
MSH3P25336 SRP54YPR088C 1626 nt9.16□□□□□ -0.94
MSH3P25336 GCD11YER025W 1584 nt9.16□□□□□ -0.94
MSH3P25336 YHM2YMR241W 945 nt9.15□□□□□ -0.94
MSH3P25336 POP2YNR052C 1302 nt9.14□□□□□ -0.95
MSH3P25336 ECM10YEL030W 1935 nt9.14□□□□□ -0.95
MSH3P25336 NAS2YIL007C 663 nt9.14□□□□□ -0.95
MSH3P25336 SRN2YLR119W 642 nt9.14□□□□□ -0.95
MSH3P25336 REX2YLR059C 810 nt9.13□□□□□ -0.95
MSH3P25336 CDD1YLR245C 429 nt9.13□□□□□ -0.95
MSH3P25336 MCM5YLR274W 2328 nt9.13□□□□□ -0.95
MSH3P25336 NAS6YGR232W 687 nt9.12□□□□□ -0.95
MSH3P25336 THP3YPR045C 1413 nt9.12□□□□□ -0.95
MSH3P25336 YIR018C-AYIR018C-A 138 nt9.11□□□□□ -0.95
MSH3P25336 SPE2YOL052C 1191 nt9.11□□□□□ -0.95
MSH3P25336 YMC2YBR104W 990 nt9.11□□□□□ -0.95
MSH3P25336 AAT1YKL106W 1356 nt9.11□□□□□ -0.95
MSH3P25336 TRP2YER090W 1524 nt9.1□□□□□ -0.95
MSH3P25336 GAS1YMR307W 1680 nt9.1□□□□□ -0.95
MSH3P25336 tS(GCU)LtS(GCU)L 80 nt9.1□□□□□ -0.95
MSH3P25336 HXT11YOL156W 1704 nt9.1□□□□□ -0.95
MSH3P25336 FRT1YOR324C 1809 nt9.1□□□□□ -0.95
MSH3P25336 FAF1YIL019W 1041 nt9.09□□□□□ -0.95
MSH3P25336 FSH2YMR222C 672 nt9.09□□□□□ -0.95
MSH3P25336 PTC6YCR079W 1329 nt9.08□□□□□ -0.96
MSH3P25336 YLR072WYLR072W 2082 nt9.08□□□□□ -0.96
MSH3P25336 BMT5YIL096C 1011 nt9.07□□□□□ -0.96
MSH3P25336 AAC3YBR085W 924 nt9.07□□□□□ -0.96
MSH3P25336 PUS5YLR165C 765 nt9.06□□□□□ -0.96
MSH3P25336 YPT11YNL304W 1254 nt9.06□□□□□ -0.96
MSH3P25336 KRE1YNL322C 942 nt9.06□□□□□ -0.96
MSH3P25336 YRF1-3YGR296W 5580 nt9.05□□□□□ -0.96
MSH3P25336 YRF1-6YNL339C 5580 nt9.05□□□□□ -0.96
MSH3P25336 YRF1-7YPL283C 5580 nt9.05□□□□□ -0.96
MSH3P25336 ESS1YJR017C 513 nt9.05□□□□□ -0.96
MSH3P25336 EMC3YKL207W 762 nt9.05□□□□□ -0.96
MSH3P25336 MRS4YKR052C 915 nt9.05□□□□□ -0.96
MSH3P25336 HMT1YBR034C 1047 nt9.05□□□□□ -0.96
MSH3P25336 MAS1YLR163C 1389 nt9.04□□□□□ -0.96
MSH3P25336 BNS1YGR230W 414 nt9.04□□□□□ -0.96
Retrieved 100 of 7,029 protein–RNA pairs in 105.9 ms