Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv16A0A0B4J1H3 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv16A0A0B4J1H3 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv16A0A0B4J1H3 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv16A0A0B4J1H3 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
Trbv16A0A0B4J1H3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC17.28■□□□□ 0.36
Trbv16A0A0B4J1H3 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trbv16A0A0B4J1H3 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv16A0A0B4J1H3 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC17.27■□□□□ 0.35
Trbv16A0A0B4J1H3 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv16A0A0B4J1H3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv16A0A0B4J1H3 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
Trbv16A0A0B4J1H3 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trbv16A0A0B4J1H3 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv16A0A0B4J1H3 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trbv16A0A0B4J1H3 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Trbv16A0A0B4J1H3 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv16A0A0B4J1H3 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv16A0A0B4J1H3 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trbv16A0A0B4J1H3 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trbv16A0A0B4J1H3 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC17.23■□□□□ 0.35
Trbv16A0A0B4J1H3 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv16A0A0B4J1H3 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv16A0A0B4J1H3 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv16A0A0B4J1H3 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trbv16A0A0B4J1H3 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Trbv16A0A0B4J1H3 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv16A0A0B4J1H3 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv16A0A0B4J1H3 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv16A0A0B4J1H3 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv16A0A0B4J1H3 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trbv16A0A0B4J1H3 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv16A0A0B4J1H3 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trbv16A0A0B4J1H3 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv16A0A0B4J1H3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Trbv16A0A0B4J1H3 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv16A0A0B4J1H3 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv16A0A0B4J1H3 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv16A0A0B4J1H3 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trbv16A0A0B4J1H3 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv16A0A0B4J1H3 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv16A0A0B4J1H3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv16A0A0B4J1H3 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv16A0A0B4J1H3 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trbv16A0A0B4J1H3 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trbv16A0A0B4J1H3 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC17.17■□□□□ 0.34
Trbv16A0A0B4J1H3 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC17.17■□□□□ 0.34
Trbv16A0A0B4J1H3 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv16A0A0B4J1H3 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv16A0A0B4J1H3 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trbv16A0A0B4J1H3 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trbv16A0A0B4J1H3 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.15■□□□□ 0.34
Trbv16A0A0B4J1H3 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Trbv16A0A0B4J1H3 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv16A0A0B4J1H3 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv16A0A0B4J1H3 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv16A0A0B4J1H3 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trbv16A0A0B4J1H3 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Trbv16A0A0B4J1H3 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv16A0A0B4J1H3 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv16A0A0B4J1H3 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trbv16A0A0B4J1H3 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trbv16A0A0B4J1H3 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv16A0A0B4J1H3 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv16A0A0B4J1H3 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv16A0A0B4J1H3 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trbv16A0A0B4J1H3 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Trbv16A0A0B4J1H3 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trbv16A0A0B4J1H3 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv16A0A0B4J1H3 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trbv16A0A0B4J1H3 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv16A0A0B4J1H3 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC17.09■□□□□ 0.33
Trbv16A0A0B4J1H3 Gm43863-201ENSMUST00000203822 1192 ntBASIC17.09■□□□□ 0.33
Trbv16A0A0B4J1H3 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trbv16A0A0B4J1H3 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trbv16A0A0B4J1H3 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv16A0A0B4J1H3 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trbv16A0A0B4J1H3 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 AC157572.2-201ENSMUST00000226970 908 ntBASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trbv16A0A0B4J1H3 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv16A0A0B4J1H3 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv16A0A0B4J1H3 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC17.06■□□□□ 0.32
Trbv16A0A0B4J1H3 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Trbv16A0A0B4J1H3 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trbv16A0A0B4J1H3 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC17.06■□□□□ 0.32
Trbv16A0A0B4J1H3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv16A0A0B4J1H3 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Trbv16A0A0B4J1H3 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trbv16A0A0B4J1H3 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC17.05■□□□□ 0.32
Trbv16A0A0B4J1H3 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Trbv16A0A0B4J1H3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv16A0A0B4J1H3 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trbv16A0A0B4J1H3 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms