Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trbv1A0A0B4J1G7 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv1A0A0B4J1G7 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv1A0A0B4J1G7 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv1A0A0B4J1G7 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trbv1A0A0B4J1G7 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trbv1A0A0B4J1G7 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trbv1A0A0B4J1G7 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trbv1A0A0B4J1G7 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv1A0A0B4J1G7 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trbv1A0A0B4J1G7 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv1A0A0B4J1G7 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.52■□□□□ 0.55
Trbv1A0A0B4J1G7 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trbv1A0A0B4J1G7 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv1A0A0B4J1G7 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv1A0A0B4J1G7 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv1A0A0B4J1G7 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trbv1A0A0B4J1G7 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.51■□□□□ 0.55
Trbv1A0A0B4J1G7 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv1A0A0B4J1G7 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv1A0A0B4J1G7 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trbv1A0A0B4J1G7 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trbv1A0A0B4J1G7 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC18.5■□□□□ 0.55
Trbv1A0A0B4J1G7 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.49■□□□□ 0.55
Trbv1A0A0B4J1G7 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trbv1A0A0B4J1G7 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trbv1A0A0B4J1G7 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv1A0A0B4J1G7 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Trbv1A0A0B4J1G7 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv1A0A0B4J1G7 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trbv1A0A0B4J1G7 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Trbv1A0A0B4J1G7 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.47■□□□□ 0.55
Trbv1A0A0B4J1G7 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trbv1A0A0B4J1G7 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trbv1A0A0B4J1G7 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Trbv1A0A0B4J1G7 Gm30346-201ENSMUST00000218641 1699 ntBASIC18.46■□□□□ 0.55
Trbv1A0A0B4J1G7 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trbv1A0A0B4J1G7 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.46■□□□□ 0.55
Trbv1A0A0B4J1G7 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv1A0A0B4J1G7 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv1A0A0B4J1G7 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trbv1A0A0B4J1G7 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Trbv1A0A0B4J1G7 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv1A0A0B4J1G7 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv1A0A0B4J1G7 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv1A0A0B4J1G7 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trbv1A0A0B4J1G7 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv1A0A0B4J1G7 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv1A0A0B4J1G7 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv1A0A0B4J1G7 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv1A0A0B4J1G7 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv1A0A0B4J1G7 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trbv1A0A0B4J1G7 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.42■□□□□ 0.54
Trbv1A0A0B4J1G7 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Trbv1A0A0B4J1G7 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC18.42■□□□□ 0.54
Trbv1A0A0B4J1G7 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv1A0A0B4J1G7 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv1A0A0B4J1G7 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trbv1A0A0B4J1G7 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.4■□□□□ 0.54
Trbv1A0A0B4J1G7 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv1A0A0B4J1G7 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv1A0A0B4J1G7 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv1A0A0B4J1G7 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC18.4■□□□□ 0.54
Trbv1A0A0B4J1G7 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv1A0A0B4J1G7 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.4■□□□□ 0.54
Trbv1A0A0B4J1G7 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trbv1A0A0B4J1G7 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trbv1A0A0B4J1G7 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trbv1A0A0B4J1G7 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Trbv1A0A0B4J1G7 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv1A0A0B4J1G7 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv1A0A0B4J1G7 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv1A0A0B4J1G7 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trbv1A0A0B4J1G7 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv1A0A0B4J1G7 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv1A0A0B4J1G7 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv1A0A0B4J1G7 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv1A0A0B4J1G7 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv1A0A0B4J1G7 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv1A0A0B4J1G7 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC18.35■□□□□ 0.53
Trbv1A0A0B4J1G7 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv1A0A0B4J1G7 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv1A0A0B4J1G7 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trbv1A0A0B4J1G7 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trbv1A0A0B4J1G7 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trbv1A0A0B4J1G7 Zfp131-205ENSMUST00000223812 663 ntBASIC18.33■□□□□ 0.52
Trbv1A0A0B4J1G7 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
Trbv1A0A0B4J1G7 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv1A0A0B4J1G7 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv1A0A0B4J1G7 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 122.8 ms