Protein–RNA interactions for Protein: Q8CDD9

Lrif1, Ligand-dependent nuclear receptor-interacting factor 1, mousemouse

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrif1Q8CDD9 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lrif1Q8CDD9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.34■□□□□ 0.37
Lrif1Q8CDD9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.34■□□□□ 0.37
Lrif1Q8CDD9 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lrif1Q8CDD9 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Lrif1Q8CDD9 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lrif1Q8CDD9 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lrif1Q8CDD9 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lrif1Q8CDD9 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Lrif1Q8CDD9 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Lrif1Q8CDD9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Lrif1Q8CDD9 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lrif1Q8CDD9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Lrif1Q8CDD9 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lrif1Q8CDD9 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lrif1Q8CDD9 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.3■□□□□ 0.36
Lrif1Q8CDD9 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lrif1Q8CDD9 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lrif1Q8CDD9 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lrif1Q8CDD9 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lrif1Q8CDD9 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.28■□□□□ 0.36
Lrif1Q8CDD9 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.28■□□□□ 0.36
Lrif1Q8CDD9 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lrif1Q8CDD9 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.28■□□□□ 0.36
Lrif1Q8CDD9 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lrif1Q8CDD9 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms