Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
Rab11fip3Q8CHD8 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
Rab11fip3Q8CHD8 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Rab11fip3Q8CHD8 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
Rab11fip3Q8CHD8 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Rab11fip3Q8CHD8 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
Rab11fip3Q8CHD8 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
Rab11fip3Q8CHD8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
Rab11fip3Q8CHD8 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Rab11fip3Q8CHD8 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC32.03■■■□□ 2.72
Rab11fip3Q8CHD8 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
Rab11fip3Q8CHD8 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
Rab11fip3Q8CHD8 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC32.01■■■□□ 2.72
Rab11fip3Q8CHD8 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC31.99■■■□□ 2.71
Rab11fip3Q8CHD8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
Rab11fip3Q8CHD8 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC31.98■■■□□ 2.71
Rab11fip3Q8CHD8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
Rab11fip3Q8CHD8 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC31.97■■■□□ 2.71
Rab11fip3Q8CHD8 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC31.96■■■□□ 2.71
Rab11fip3Q8CHD8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
Rab11fip3Q8CHD8 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Rab11fip3Q8CHD8 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
Rab11fip3Q8CHD8 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC31.95■■■□□ 2.71
Rab11fip3Q8CHD8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC31.95■■■□□ 2.7
Rab11fip3Q8CHD8 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Rab11fip3Q8CHD8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC31.93■■■□□ 2.7
Rab11fip3Q8CHD8 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Rab11fip3Q8CHD8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
Rab11fip3Q8CHD8 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC31.9■■■□□ 2.7
Rab11fip3Q8CHD8 Gm5987-201ENSMUST00000196433 1151 ntBASIC31.9■■■□□ 2.7
Rab11fip3Q8CHD8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
Rab11fip3Q8CHD8 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.69
Rab11fip3Q8CHD8 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
Rab11fip3Q8CHD8 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC31.88■■■□□ 2.69
Rab11fip3Q8CHD8 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC31.88■■■□□ 2.69
Rab11fip3Q8CHD8 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC31.87■■■□□ 2.69
Rab11fip3Q8CHD8 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Rab11fip3Q8CHD8 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Rab11fip3Q8CHD8 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC31.87■■■□□ 2.69
Rab11fip3Q8CHD8 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC31.85■■■□□ 2.69
Rab11fip3Q8CHD8 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC31.85■■■□□ 2.69
Rab11fip3Q8CHD8 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC31.85■■■□□ 2.69
Rab11fip3Q8CHD8 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Rab11fip3Q8CHD8 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC31.84■■■□□ 2.69
Rab11fip3Q8CHD8 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Rab11fip3Q8CHD8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC31.84■■■□□ 2.69
Rab11fip3Q8CHD8 Gm7432-201ENSMUST00000210343 879 ntBASIC31.82■■■□□ 2.68
Rab11fip3Q8CHD8 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Rab11fip3Q8CHD8 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Rab11fip3Q8CHD8 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
Rab11fip3Q8CHD8 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC31.8■■■□□ 2.68
Rab11fip3Q8CHD8 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Rab11fip3Q8CHD8 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Rab11fip3Q8CHD8 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
Rab11fip3Q8CHD8 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Rab11fip3Q8CHD8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
Rab11fip3Q8CHD8 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.67
Rab11fip3Q8CHD8 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
Rab11fip3Q8CHD8 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC31.76■■■□□ 2.67
Rab11fip3Q8CHD8 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
Rab11fip3Q8CHD8 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
Rab11fip3Q8CHD8 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Rab11fip3Q8CHD8 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC31.75■■■□□ 2.67
Rab11fip3Q8CHD8 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC31.75■■■□□ 2.67
Rab11fip3Q8CHD8 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Rab11fip3Q8CHD8 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Rab11fip3Q8CHD8 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC31.73■■■□□ 2.67
Rab11fip3Q8CHD8 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Rab11fip3Q8CHD8 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC31.72■■■□□ 2.67
Rab11fip3Q8CHD8 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Rab11fip3Q8CHD8 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC31.71■■■□□ 2.67
Rab11fip3Q8CHD8 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Rab11fip3Q8CHD8 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Rab11fip3Q8CHD8 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Rab11fip3Q8CHD8 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC31.67■■■□□ 2.66
Rab11fip3Q8CHD8 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
Rab11fip3Q8CHD8 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC31.66■■■□□ 2.66
Rab11fip3Q8CHD8 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC31.66■■■□□ 2.66
Rab11fip3Q8CHD8 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
Rab11fip3Q8CHD8 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Rab11fip3Q8CHD8 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC31.65■■■□□ 2.66
Rab11fip3Q8CHD8 Pcf11-205ENSMUST00000208255 1720 ntBASIC31.64■■■□□ 2.66
Rab11fip3Q8CHD8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC31.64■■■□□ 2.66
Rab11fip3Q8CHD8 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Rab11fip3Q8CHD8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC31.62■■■□□ 2.65
Rab11fip3Q8CHD8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Rab11fip3Q8CHD8 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Rab11fip3Q8CHD8 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
Rab11fip3Q8CHD8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC31.6■■■□□ 2.65
Rab11fip3Q8CHD8 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC31.6■■■□□ 2.65
Rab11fip3Q8CHD8 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC31.6■■■□□ 2.65
Rab11fip3Q8CHD8 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Rab11fip3Q8CHD8 Gm11599-201ENSMUST00000118720 878 ntBASIC31.59■■■□□ 2.65
Rab11fip3Q8CHD8 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
Rab11fip3Q8CHD8 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC31.58■■■□□ 2.65
Rab11fip3Q8CHD8 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Rab11fip3Q8CHD8 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Rab11fip3Q8CHD8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.65
Rab11fip3Q8CHD8 Gm30023-201ENSMUST00000197970 889 ntBASIC31.57■■■□□ 2.64
Rab11fip3Q8CHD8 Zxda-201ENSMUST00000117281 2621 ntBASIC31.56■■■□□ 2.64
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms