Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC24■■□□□ 1.43
Ubfd1Q78JW9 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ubfd1Q78JW9 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ubfd1Q78JW9 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ubfd1Q78JW9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ubfd1Q78JW9 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ubfd1Q78JW9 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Ubfd1Q78JW9 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC23.96■■□□□ 1.43
Ubfd1Q78JW9 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ubfd1Q78JW9 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Ubfd1Q78JW9 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ubfd1Q78JW9 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC23.94■■□□□ 1.42
Ubfd1Q78JW9 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Ubfd1Q78JW9 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Ubfd1Q78JW9 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Ubfd1Q78JW9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
Ubfd1Q78JW9 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.92■■□□□ 1.42
Ubfd1Q78JW9 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ubfd1Q78JW9 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ubfd1Q78JW9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ubfd1Q78JW9 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ubfd1Q78JW9 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Ubfd1Q78JW9 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ubfd1Q78JW9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ubfd1Q78JW9 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC23.87■■□□□ 1.41
Ubfd1Q78JW9 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC23.87■■□□□ 1.41
Ubfd1Q78JW9 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC23.87■■□□□ 1.41
Ubfd1Q78JW9 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC23.86■■□□□ 1.41
Ubfd1Q78JW9 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC23.86■■□□□ 1.41
Ubfd1Q78JW9 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
Ubfd1Q78JW9 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Ubfd1Q78JW9 AC153504.1-201ENSMUST00000218379 2290 ntBASIC23.84■■□□□ 1.41
Ubfd1Q78JW9 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ubfd1Q78JW9 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ubfd1Q78JW9 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ubfd1Q78JW9 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Ubfd1Q78JW9 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ubfd1Q78JW9 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
Ubfd1Q78JW9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ubfd1Q78JW9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Ubfd1Q78JW9 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ubfd1Q78JW9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ubfd1Q78JW9 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC23.8■■□□□ 1.4
Ubfd1Q78JW9 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.8■■□□□ 1.4
Ubfd1Q78JW9 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC23.8■■□□□ 1.4
Ubfd1Q78JW9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Ubfd1Q78JW9 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
Ubfd1Q78JW9 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC23.79■■□□□ 1.4
Ubfd1Q78JW9 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ubfd1Q78JW9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC23.78■■□□□ 1.4
Ubfd1Q78JW9 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Ubfd1Q78JW9 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ubfd1Q78JW9 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ubfd1Q78JW9 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ubfd1Q78JW9 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ubfd1Q78JW9 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ubfd1Q78JW9 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.76■■□□□ 1.39
Ubfd1Q78JW9 Gm5987-201ENSMUST00000196433 1151 ntBASIC23.76■■□□□ 1.39
Ubfd1Q78JW9 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC23.76■■□□□ 1.39
Ubfd1Q78JW9 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Ubfd1Q78JW9 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ubfd1Q78JW9 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ubfd1Q78JW9 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
Ubfd1Q78JW9 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
Ubfd1Q78JW9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC23.72■■□□□ 1.39
Ubfd1Q78JW9 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC23.72■■□□□ 1.39
Ubfd1Q78JW9 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Ubfd1Q78JW9 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Ubfd1Q78JW9 Gm7432-201ENSMUST00000210343 879 ntBASIC23.71■■□□□ 1.39
Ubfd1Q78JW9 Zxda-201ENSMUST00000117281 2621 ntBASIC23.7■■□□□ 1.38
Ubfd1Q78JW9 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ubfd1Q78JW9 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ubfd1Q78JW9 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ubfd1Q78JW9 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Ubfd1Q78JW9 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Ubfd1Q78JW9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ubfd1Q78JW9 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Ubfd1Q78JW9 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Ubfd1Q78JW9 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ubfd1Q78JW9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC23.68■■□□□ 1.38
Ubfd1Q78JW9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Ubfd1Q78JW9 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Ubfd1Q78JW9 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC23.67■■□□□ 1.38
Ubfd1Q78JW9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Ubfd1Q78JW9 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC23.66■■□□□ 1.38
Ubfd1Q78JW9 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Ubfd1Q78JW9 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ubfd1Q78JW9 Pcf11-205ENSMUST00000208255 1720 ntBASIC23.65■■□□□ 1.38
Ubfd1Q78JW9 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ubfd1Q78JW9 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ubfd1Q78JW9 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ubfd1Q78JW9 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.64■■□□□ 1.37
Ubfd1Q78JW9 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
Ubfd1Q78JW9 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC23.63■■□□□ 1.37
Ubfd1Q78JW9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC23.63■■□□□ 1.37
Ubfd1Q78JW9 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ubfd1Q78JW9 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Ubfd1Q78JW9 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ubfd1Q78JW9 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Ubfd1Q78JW9 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms