Protein–RNA interactions for Protein: P97334

Nkx2-3, Homeobox protein Nkx-2.3, mousemouse

Predictions only

Length 362 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-3P97334 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Nkx2-3P97334 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Nkx2-3P97334 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Nkx2-3P97334 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
Nkx2-3P97334 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Nkx2-3P97334 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
Nkx2-3P97334 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC31.72■■■□□ 2.67
Nkx2-3P97334 Gm6345-201ENSMUST00000180378 1691 ntBASIC31.71■■■□□ 2.67
Nkx2-3P97334 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Nkx2-3P97334 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Nkx2-3P97334 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Nkx2-3P97334 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC31.69■■■□□ 2.66
Nkx2-3P97334 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC31.69■■■□□ 2.66
Nkx2-3P97334 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Nkx2-3P97334 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
Nkx2-3P97334 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
Nkx2-3P97334 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Nkx2-3P97334 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
Nkx2-3P97334 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
Nkx2-3P97334 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Nkx2-3P97334 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC31.64■■■□□ 2.66
Nkx2-3P97334 Gm7432-201ENSMUST00000210343 879 ntBASIC31.62■■■□□ 2.65
Nkx2-3P97334 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
Nkx2-3P97334 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
Nkx2-3P97334 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
Nkx2-3P97334 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
Nkx2-3P97334 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC31.57■■■□□ 2.64
Nkx2-3P97334 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC31.57■■■□□ 2.64
Nkx2-3P97334 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Nkx2-3P97334 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Nkx2-3P97334 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
Nkx2-3P97334 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC31.52■■■□□ 2.64
Nkx2-3P97334 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Nkx2-3P97334 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC31.52■■■□□ 2.64
Nkx2-3P97334 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC31.51■■■□□ 2.63
Nkx2-3P97334 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Nkx2-3P97334 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Nkx2-3P97334 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Nkx2-3P97334 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
Nkx2-3P97334 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC31.48■■■□□ 2.63
Nkx2-3P97334 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC31.47■■■□□ 2.63
Nkx2-3P97334 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Nkx2-3P97334 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Nkx2-3P97334 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Nkx2-3P97334 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Nkx2-3P97334 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
Nkx2-3P97334 Gm11599-201ENSMUST00000118720 878 ntBASIC31.44■■■□□ 2.62
Nkx2-3P97334 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
Nkx2-3P97334 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Nkx2-3P97334 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Nkx2-3P97334 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Nkx2-3P97334 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Nkx2-3P97334 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC31.41■■■□□ 2.62
Nkx2-3P97334 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC31.41■■■□□ 2.62
Nkx2-3P97334 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC31.41■■■□□ 2.62
Nkx2-3P97334 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
Nkx2-3P97334 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Nkx2-3P97334 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
Nkx2-3P97334 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
Nkx2-3P97334 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC31.39■■■□□ 2.62
Nkx2-3P97334 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC31.38■■■□□ 2.61
Nkx2-3P97334 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC31.38■■■□□ 2.61
Nkx2-3P97334 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC31.37■■■□□ 2.61
Nkx2-3P97334 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Nkx2-3P97334 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
Nkx2-3P97334 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Nkx2-3P97334 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Nkx2-3P97334 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC31.34■■■□□ 2.61
Nkx2-3P97334 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Nkx2-3P97334 Gm30023-201ENSMUST00000197970 889 ntBASIC31.33■■■□□ 2.61
Nkx2-3P97334 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
Nkx2-3P97334 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC31.31■■■□□ 2.6
Nkx2-3P97334 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Nkx2-3P97334 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Nkx2-3P97334 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
Nkx2-3P97334 Gm11175-201ENSMUST00000116172 543 ntBASIC31.3■■■□□ 2.6
Nkx2-3P97334 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
Nkx2-3P97334 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Nkx2-3P97334 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Nkx2-3P97334 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC31.29■■■□□ 2.6
Nkx2-3P97334 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
Nkx2-3P97334 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Nkx2-3P97334 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
Nkx2-3P97334 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Nkx2-3P97334 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Nkx2-3P97334 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
Nkx2-3P97334 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Nkx2-3P97334 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Nkx2-3P97334 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Nkx2-3P97334 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Nkx2-3P97334 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Nkx2-3P97334 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Nkx2-3P97334 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Nkx2-3P97334 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Nkx2-3P97334 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Nkx2-3P97334 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Nkx2-3P97334 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC31.21■■■□□ 2.59
Nkx2-3P97334 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC31.21■■■□□ 2.59
Nkx2-3P97334 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Nkx2-3P97334 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms