Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Nr1i3O35627 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
Nr1i3O35627 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Nr1i3O35627 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC26.31■■□□□ 1.8
Nr1i3O35627 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Nr1i3O35627 Pcf11-205ENSMUST00000208255 1720 ntBASIC26.29■■□□□ 1.8
Nr1i3O35627 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Nr1i3O35627 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Nr1i3O35627 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Nr1i3O35627 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Nr1i3O35627 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Nr1i3O35627 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Nr1i3O35627 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Nr1i3O35627 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Nr1i3O35627 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Nr1i3O35627 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Nr1i3O35627 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Nr1i3O35627 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC26.23■■□□□ 1.79
Nr1i3O35627 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Nr1i3O35627 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Nr1i3O35627 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Nr1i3O35627 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.21■■□□□ 1.79
Nr1i3O35627 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
Nr1i3O35627 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Nr1i3O35627 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
Nr1i3O35627 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
Nr1i3O35627 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Nr1i3O35627 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Nr1i3O35627 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Nr1i3O35627 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Nr1i3O35627 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Nr1i3O35627 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
Nr1i3O35627 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC26.12■■□□□ 1.77
Nr1i3O35627 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Nr1i3O35627 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
Nr1i3O35627 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Nr1i3O35627 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Nr1i3O35627 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Nr1i3O35627 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
Nr1i3O35627 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Nr1i3O35627 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Nr1i3O35627 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
Nr1i3O35627 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC26.07■■□□□ 1.76
Nr1i3O35627 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Nr1i3O35627 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Nr1i3O35627 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Nr1i3O35627 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Nr1i3O35627 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
Nr1i3O35627 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Nr1i3O35627 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
Nr1i3O35627 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Nr1i3O35627 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Nr1i3O35627 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Nr1i3O35627 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Nr1i3O35627 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Nr1i3O35627 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC26.03■■□□□ 1.76
Nr1i3O35627 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Nr1i3O35627 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Nr1i3O35627 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Nr1i3O35627 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
Nr1i3O35627 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Nr1i3O35627 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
Nr1i3O35627 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Nr1i3O35627 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
Nr1i3O35627 Gm43863-201ENSMUST00000203822 1192 ntBASIC25.98■■□□□ 1.75
Nr1i3O35627 Zfp131-205ENSMUST00000223812 663 ntBASIC25.97■■□□□ 1.75
Nr1i3O35627 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC25.97■■□□□ 1.75
Nr1i3O35627 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
Nr1i3O35627 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC25.96■■□□□ 1.75
Nr1i3O35627 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Nr1i3O35627 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Nr1i3O35627 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
Nr1i3O35627 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Nr1i3O35627 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Nr1i3O35627 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Nr1i3O35627 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC25.94■■□□□ 1.74
Nr1i3O35627 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC25.94■■□□□ 1.74
Nr1i3O35627 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
Nr1i3O35627 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
Nr1i3O35627 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Nr1i3O35627 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Nr1i3O35627 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Nr1i3O35627 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Nr1i3O35627 AC157572.2-201ENSMUST00000226970 908 ntBASIC25.9■■□□□ 1.74
Nr1i3O35627 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Nr1i3O35627 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC25.89■■□□□ 1.74
Nr1i3O35627 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC25.89■■□□□ 1.74
Nr1i3O35627 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.73
Nr1i3O35627 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Nr1i3O35627 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Nr1i3O35627 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Nr1i3O35627 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Nr1i3O35627 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Nr1i3O35627 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Nr1i3O35627 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC25.87■■□□□ 1.73
Nr1i3O35627 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
Nr1i3O35627 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC25.87■■□□□ 1.73
Nr1i3O35627 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC25.87■■□□□ 1.73
Nr1i3O35627 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC25.87■■□□□ 1.73
Nr1i3O35627 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms