Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Gm6311-201ENSMUST00000073790 878 ntBASIC20.83■□□□□ 0.93
Col6a4A2AX52 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Col6a4A2AX52 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.83■□□□□ 0.92
Col6a4A2AX52 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.83■□□□□ 0.92
Col6a4A2AX52 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Col6a4A2AX52 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Col6a4A2AX52 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Col6a4A2AX52 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col6a4A2AX52 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Col6a4A2AX52 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Col6a4A2AX52 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Col6a4A2AX52 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col6a4A2AX52 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.78■□□□□ 0.92
Col6a4A2AX52 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Col6a4A2AX52 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col6a4A2AX52 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a4A2AX52 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.77■□□□□ 0.92
Col6a4A2AX52 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a4A2AX52 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a4A2AX52 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a4A2AX52 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.75■□□□□ 0.91
Col6a4A2AX52 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.75■□□□□ 0.91
Col6a4A2AX52 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a4A2AX52 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a4A2AX52 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.75■□□□□ 0.91
Col6a4A2AX52 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.75■□□□□ 0.91
Col6a4A2AX52 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a4A2AX52 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col6a4A2AX52 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col6a4A2AX52 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.73■□□□□ 0.91
Col6a4A2AX52 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a4A2AX52 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Col6a4A2AX52 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a4A2AX52 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a4A2AX52 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a4A2AX52 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a4A2AX52 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.71■□□□□ 0.91
Col6a4A2AX52 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.71■□□□□ 0.91
Col6a4A2AX52 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.71■□□□□ 0.91
Col6a4A2AX52 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a4A2AX52 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a4A2AX52 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col6a4A2AX52 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.69■□□□□ 0.9
Col6a4A2AX52 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col6a4A2AX52 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.69■□□□□ 0.9
Col6a4A2AX52 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Col6a4A2AX52 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a4A2AX52 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a4A2AX52 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a4A2AX52 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col6a4A2AX52 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col6a4A2AX52 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.65■□□□□ 0.9
Col6a4A2AX52 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.65■□□□□ 0.9
Col6a4A2AX52 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col6a4A2AX52 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.62■□□□□ 0.89
Col6a4A2AX52 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Col6a4A2AX52 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col6a4A2AX52 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a4A2AX52 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a4A2AX52 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col6a4A2AX52 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a4A2AX52 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a4A2AX52 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a4A2AX52 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a4A2AX52 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col6a4A2AX52 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col6a4A2AX52 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col6a4A2AX52 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.58■□□□□ 0.89
Col6a4A2AX52 Gm12366-201ENSMUST00000121722 873 ntBASIC20.58■□□□□ 0.89
Col6a4A2AX52 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.58■□□□□ 0.89
Col6a4A2AX52 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col6a4A2AX52 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.58■□□□□ 0.89
Col6a4A2AX52 Gm5786-201ENSMUST00000085368 882 ntBASIC20.58■□□□□ 0.89
Col6a4A2AX52 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Col6a4A2AX52 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col6a4A2AX52 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
Col6a4A2AX52 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col6a4A2AX52 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col6a4A2AX52 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col6a4A2AX52 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Col6a4A2AX52 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col6a4A2AX52 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a4A2AX52 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a4A2AX52 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a4A2AX52 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a4A2AX52 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a4A2AX52 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.54■□□□□ 0.88
Col6a4A2AX52 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.54■□□□□ 0.88
Col6a4A2AX52 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a4A2AX52 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a4A2AX52 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Col6a4A2AX52 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a4A2AX52 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col6a4A2AX52 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.52■□□□□ 0.87
Col6a4A2AX52 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a4A2AX52 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a4A2AX52 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a4A2AX52 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC20.5■□□□□ 0.87
Col6a4A2AX52 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a4A2AX52 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 76.4 ms