Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Trbv16A0A0B4J1H3 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv16A0A0B4J1H3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv16A0A0B4J1H3 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trbv16A0A0B4J1H3 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv16A0A0B4J1H3 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv16A0A0B4J1H3 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv16A0A0B4J1H3 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC17.52■□□□□ 0.4
Trbv16A0A0B4J1H3 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trbv16A0A0B4J1H3 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv16A0A0B4J1H3 Gm24804-201ENSMUST00000174982 85 ntBASIC17.5■□□□□ 0.39
Trbv16A0A0B4J1H3 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 Gm16148-201ENSMUST00000119653 893 ntBASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Pcf11-205ENSMUST00000208255 1720 ntBASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv16A0A0B4J1H3 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Trbv16A0A0B4J1H3 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv16A0A0B4J1H3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC17.46■□□□□ 0.39
Trbv16A0A0B4J1H3 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv16A0A0B4J1H3 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Trbv16A0A0B4J1H3 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
Trbv16A0A0B4J1H3 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv16A0A0B4J1H3 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv16A0A0B4J1H3 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv16A0A0B4J1H3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Trbv16A0A0B4J1H3 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv16A0A0B4J1H3 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv16A0A0B4J1H3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv16A0A0B4J1H3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv16A0A0B4J1H3 AC153890.1-201ENSMUST00000220021 2469 ntBASIC17.42■□□□□ 0.38
Trbv16A0A0B4J1H3 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv16A0A0B4J1H3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trbv16A0A0B4J1H3 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC17.42■□□□□ 0.38
Trbv16A0A0B4J1H3 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv16A0A0B4J1H3 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv16A0A0B4J1H3 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv16A0A0B4J1H3 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv16A0A0B4J1H3 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trbv16A0A0B4J1H3 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC17.38■□□□□ 0.37
Trbv16A0A0B4J1H3 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv16A0A0B4J1H3 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv16A0A0B4J1H3 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv16A0A0B4J1H3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
Trbv16A0A0B4J1H3 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Trbv16A0A0B4J1H3 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv16A0A0B4J1H3 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC17.34■□□□□ 0.37
Trbv16A0A0B4J1H3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Trbv16A0A0B4J1H3 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv16A0A0B4J1H3 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv16A0A0B4J1H3 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv16A0A0B4J1H3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv16A0A0B4J1H3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC17.32■□□□□ 0.36
Trbv16A0A0B4J1H3 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv16A0A0B4J1H3 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trbv16A0A0B4J1H3 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv16A0A0B4J1H3 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms