Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Trbv16A0A0B4J1H3 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv16A0A0B4J1H3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv16A0A0B4J1H3 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv16A0A0B4J1H3 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trbv16A0A0B4J1H3 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv16A0A0B4J1H3 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv16A0A0B4J1H3 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv16A0A0B4J1H3 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv16A0A0B4J1H3 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC17.52■□□□□ 0.4
Trbv16A0A0B4J1H3 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trbv16A0A0B4J1H3 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv16A0A0B4J1H3 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv16A0A0B4J1H3 Gm24804-201ENSMUST00000174982 85 ntBASIC17.5■□□□□ 0.39
Trbv16A0A0B4J1H3 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 Gm16148-201ENSMUST00000119653 893 ntBASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv16A0A0B4J1H3 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Pcf11-205ENSMUST00000208255 1720 ntBASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv16A0A0B4J1H3 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv16A0A0B4J1H3 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Trbv16A0A0B4J1H3 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv16A0A0B4J1H3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC17.46■□□□□ 0.39
Trbv16A0A0B4J1H3 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv16A0A0B4J1H3 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Trbv16A0A0B4J1H3 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
Trbv16A0A0B4J1H3 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv16A0A0B4J1H3 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv16A0A0B4J1H3 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv16A0A0B4J1H3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Trbv16A0A0B4J1H3 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv16A0A0B4J1H3 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv16A0A0B4J1H3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv16A0A0B4J1H3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv16A0A0B4J1H3 AC153890.1-201ENSMUST00000220021 2469 ntBASIC17.42■□□□□ 0.38
Trbv16A0A0B4J1H3 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv16A0A0B4J1H3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Trbv16A0A0B4J1H3 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC17.42■□□□□ 0.38
Trbv16A0A0B4J1H3 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv16A0A0B4J1H3 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv16A0A0B4J1H3 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv16A0A0B4J1H3 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv16A0A0B4J1H3 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trbv16A0A0B4J1H3 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv16A0A0B4J1H3 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC17.38■□□□□ 0.37
Trbv16A0A0B4J1H3 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv16A0A0B4J1H3 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv16A0A0B4J1H3 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv16A0A0B4J1H3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trbv16A0A0B4J1H3 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
Trbv16A0A0B4J1H3 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Trbv16A0A0B4J1H3 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv16A0A0B4J1H3 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC17.34■□□□□ 0.37
Trbv16A0A0B4J1H3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Trbv16A0A0B4J1H3 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv16A0A0B4J1H3 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv16A0A0B4J1H3 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv16A0A0B4J1H3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv16A0A0B4J1H3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC17.32■□□□□ 0.36
Trbv16A0A0B4J1H3 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trbv16A0A0B4J1H3 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trbv16A0A0B4J1H3 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv16A0A0B4J1H3 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv16A0A0B4J1H3 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms