Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.74■■□□□ 1.23
Trav8n-2A0A075B633 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Trav8n-2A0A075B633 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Trav8n-2A0A075B633 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Trav8n-2A0A075B633 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC22.73■■□□□ 1.23
Trav8n-2A0A075B633 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trav8n-2A0A075B633 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22.72■■□□□ 1.23
Trav8n-2A0A075B633 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trav8n-2A0A075B633 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav8n-2A0A075B633 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav8n-2A0A075B633 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav8n-2A0A075B633 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Trav8n-2A0A075B633 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Trav8n-2A0A075B633 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.69■■□□□ 1.22
Trav8n-2A0A075B633 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Trav8n-2A0A075B633 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC22.69■■□□□ 1.22
Trav8n-2A0A075B633 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Trav8n-2A0A075B633 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Trav8n-2A0A075B633 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Trav8n-2A0A075B633 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC22.66■■□□□ 1.22
Trav8n-2A0A075B633 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav8n-2A0A075B633 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC22.65■■□□□ 1.22
Trav8n-2A0A075B633 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Trav8n-2A0A075B633 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Trav8n-2A0A075B633 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC22.64■■□□□ 1.21
Trav8n-2A0A075B633 Mir6538-201ENSMUST00000183713 110 ntBASIC22.63■■□□□ 1.21
Trav8n-2A0A075B633 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
Trav8n-2A0A075B633 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Trav8n-2A0A075B633 AC131739.1-201ENSMUST00000221692 1245 ntBASIC22.6■■□□□ 1.21
Trav8n-2A0A075B633 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Trav8n-2A0A075B633 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
Trav8n-2A0A075B633 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Trav8n-2A0A075B633 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Trav8n-2A0A075B633 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC22.59■■□□□ 1.21
Trav8n-2A0A075B633 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Trav8n-2A0A075B633 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Trav8n-2A0A075B633 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Trav8n-2A0A075B633 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
Trav8n-2A0A075B633 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
Trav8n-2A0A075B633 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trav8n-2A0A075B633 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC22.54■■□□□ 1.2
Trav8n-2A0A075B633 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav8n-2A0A075B633 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav8n-2A0A075B633 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trav8n-2A0A075B633 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trav8n-2A0A075B633 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Trav8n-2A0A075B633 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Trav8n-2A0A075B633 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trav8n-2A0A075B633 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Trav8n-2A0A075B633 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Trav8n-2A0A075B633 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.5■■□□□ 1.19
Trav8n-2A0A075B633 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trav8n-2A0A075B633 Gm11175-201ENSMUST00000116172 543 ntBASIC22.49■■□□□ 1.19
Trav8n-2A0A075B633 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trav8n-2A0A075B633 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Trav8n-2A0A075B633 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC22.48■■□□□ 1.19
Trav8n-2A0A075B633 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trav8n-2A0A075B633 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Trav8n-2A0A075B633 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trav8n-2A0A075B633 Gm6311-201ENSMUST00000073790 878 ntBASIC22.45■■□□□ 1.18
Trav8n-2A0A075B633 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trav8n-2A0A075B633 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.45■■□□□ 1.18
Trav8n-2A0A075B633 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Trav8n-2A0A075B633 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22.44■■□□□ 1.18
Trav8n-2A0A075B633 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC22.44■■□□□ 1.18
Trav8n-2A0A075B633 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav8n-2A0A075B633 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav8n-2A0A075B633 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Trav8n-2A0A075B633 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav8n-2A0A075B633 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav8n-2A0A075B633 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav8n-2A0A075B633 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav8n-2A0A075B633 AC167019.3-201ENSMUST00000228225 1266 ntBASIC22.41■■□□□ 1.18
Trav8n-2A0A075B633 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav8n-2A0A075B633 Particl-201ENSMUST00000205370 1560 ntBASIC22.41■■□□□ 1.18
Trav8n-2A0A075B633 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav8n-2A0A075B633 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trav8n-2A0A075B633 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Trav8n-2A0A075B633 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
Trav8n-2A0A075B633 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
Trav8n-2A0A075B633 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trav8n-2A0A075B633 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trav8n-2A0A075B633 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav8n-2A0A075B633 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Trav8n-2A0A075B633 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trav8n-2A0A075B633 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav8n-2A0A075B633 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trav8n-2A0A075B633 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Trav8n-2A0A075B633 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trav8n-2A0A075B633 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Trav8n-2A0A075B633 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trav8n-2A0A075B633 Cap2-205ENSMUST00000225824 1634 ntBASIC22.34■■□□□ 1.17
Trav8n-2A0A075B633 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC22.33■■□□□ 1.17
Trav8n-2A0A075B633 Gm30023-201ENSMUST00000197970 889 ntBASIC22.33■■□□□ 1.17
Trav8n-2A0A075B633 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trav8n-2A0A075B633 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22.32■■□□□ 1.16
Trav8n-2A0A075B633 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Trav8n-2A0A075B633 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC22.32■■□□□ 1.16
Trav8n-2A0A075B633 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Trav8n-2A0A075B633 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 111.7 ms