Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav6-1A0A075B5Z8 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trav6-1A0A075B5Z8 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6-1A0A075B5Z8 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Trav6-1A0A075B5Z8 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6-1A0A075B5Z8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trav6-1A0A075B5Z8 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trav6-1A0A075B5Z8 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trav6-1A0A075B5Z8 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
Trav6-1A0A075B5Z8 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav6-1A0A075B5Z8 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav6-1A0A075B5Z8 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trav6-1A0A075B5Z8 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trav6-1A0A075B5Z8 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Trav6-1A0A075B5Z8 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6-1A0A075B5Z8 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.51■□□□□ 0.71
Trav6-1A0A075B5Z8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trav6-1A0A075B5Z8 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Trav6-1A0A075B5Z8 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Trav6-1A0A075B5Z8 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6-1A0A075B5Z8 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6-1A0A075B5Z8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6-1A0A075B5Z8 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trav6-1A0A075B5Z8 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Trav6-1A0A075B5Z8 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.48■□□□□ 0.71
Trav6-1A0A075B5Z8 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav6-1A0A075B5Z8 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav6-1A0A075B5Z8 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.48■□□□□ 0.71
Trav6-1A0A075B5Z8 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trav6-1A0A075B5Z8 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trav6-1A0A075B5Z8 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trav6-1A0A075B5Z8 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6-1A0A075B5Z8 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6-1A0A075B5Z8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6-1A0A075B5Z8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trav6-1A0A075B5Z8 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trav6-1A0A075B5Z8 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
Trav6-1A0A075B5Z8 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav6-1A0A075B5Z8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav6-1A0A075B5Z8 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trav6-1A0A075B5Z8 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trav6-1A0A075B5Z8 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav6-1A0A075B5Z8 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav6-1A0A075B5Z8 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trav6-1A0A075B5Z8 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC19.44■□□□□ 0.7
Trav6-1A0A075B5Z8 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav6-1A0A075B5Z8 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trav6-1A0A075B5Z8 Gm26115-201ENSMUST00000175605 87 ntBASIC19.43■□□□□ 0.7
Trav6-1A0A075B5Z8 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trav6-1A0A075B5Z8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trav6-1A0A075B5Z8 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trav6-1A0A075B5Z8 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trav6-1A0A075B5Z8 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6-1A0A075B5Z8 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6-1A0A075B5Z8 Gm8109-201ENSMUST00000194076 746 ntBASIC19.41■□□□□ 0.7
Trav6-1A0A075B5Z8 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trav6-1A0A075B5Z8 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trav6-1A0A075B5Z8 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trav6-1A0A075B5Z8 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
Trav6-1A0A075B5Z8 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trav6-1A0A075B5Z8 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6-1A0A075B5Z8 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6-1A0A075B5Z8 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6-1A0A075B5Z8 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6-1A0A075B5Z8 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6-1A0A075B5Z8 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6-1A0A075B5Z8 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6-1A0A075B5Z8 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.35■□□□□ 0.69
Trav6-1A0A075B5Z8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6-1A0A075B5Z8 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6-1A0A075B5Z8 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6-1A0A075B5Z8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Trav6-1A0A075B5Z8 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Trav6-1A0A075B5Z8 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav6-1A0A075B5Z8 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.31■□□□□ 0.68
Trav6-1A0A075B5Z8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.31■□□□□ 0.68
Trav6-1A0A075B5Z8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav6-1A0A075B5Z8 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trav6-1A0A075B5Z8 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.3■□□□□ 0.68
Trav6-1A0A075B5Z8 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6-1A0A075B5Z8 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6-1A0A075B5Z8 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6-1A0A075B5Z8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6-1A0A075B5Z8 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6-1A0A075B5Z8 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6-1A0A075B5Z8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Trav6-1A0A075B5Z8 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6-1A0A075B5Z8 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6-1A0A075B5Z8 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6-1A0A075B5Z8 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6-1A0A075B5Z8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6-1A0A075B5Z8 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6-1A0A075B5Z8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6-1A0A075B5Z8 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6-1A0A075B5Z8 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trav6-1A0A075B5Z8 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trav6-1A0A075B5Z8 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav6-1A0A075B5Z8 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav6-1A0A075B5Z8 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6-1A0A075B5Z8 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms