Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Trav1A0A075B5Z4 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Trav1A0A075B5Z4 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trav1A0A075B5Z4 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Trav1A0A075B5Z4 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Trav1A0A075B5Z4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Trav1A0A075B5Z4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
Trav1A0A075B5Z4 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Trav1A0A075B5Z4 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trav1A0A075B5Z4 Pcf11-205ENSMUST00000208255 1720 ntBASIC22.78■■□□□ 1.24
Trav1A0A075B5Z4 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22.78■■□□□ 1.24
Trav1A0A075B5Z4 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trav1A0A075B5Z4 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
Trav1A0A075B5Z4 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Trav1A0A075B5Z4 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Trav1A0A075B5Z4 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Trav1A0A075B5Z4 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC22.75■■□□□ 1.23
Trav1A0A075B5Z4 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Trav1A0A075B5Z4 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Trav1A0A075B5Z4 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Trav1A0A075B5Z4 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Trav1A0A075B5Z4 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav1A0A075B5Z4 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Trav1A0A075B5Z4 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trav1A0A075B5Z4 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Trav1A0A075B5Z4 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Trav1A0A075B5Z4 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Trav1A0A075B5Z4 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Trav1A0A075B5Z4 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC22.65■■□□□ 1.22
Trav1A0A075B5Z4 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Trav1A0A075B5Z4 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Trav1A0A075B5Z4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
Trav1A0A075B5Z4 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Trav1A0A075B5Z4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trav1A0A075B5Z4 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
Trav1A0A075B5Z4 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trav1A0A075B5Z4 Zfp131-205ENSMUST00000223812 663 ntBASIC22.62■■□□□ 1.21
Trav1A0A075B5Z4 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC22.61■■□□□ 1.21
Trav1A0A075B5Z4 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Trav1A0A075B5Z4 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Trav1A0A075B5Z4 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav1A0A075B5Z4 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC22.6■■□□□ 1.21
Trav1A0A075B5Z4 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
Trav1A0A075B5Z4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav1A0A075B5Z4 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Trav1A0A075B5Z4 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC22.59■■□□□ 1.21
Trav1A0A075B5Z4 Gm43863-201ENSMUST00000203822 1192 ntBASIC22.59■■□□□ 1.21
Trav1A0A075B5Z4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trav1A0A075B5Z4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
Trav1A0A075B5Z4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Trav1A0A075B5Z4 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
Trav1A0A075B5Z4 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC22.57■■□□□ 1.2
Trav1A0A075B5Z4 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trav1A0A075B5Z4 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trav1A0A075B5Z4 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trav1A0A075B5Z4 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trav1A0A075B5Z4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trav1A0A075B5Z4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trav1A0A075B5Z4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav1A0A075B5Z4 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Trav1A0A075B5Z4 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trav1A0A075B5Z4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Trav1A0A075B5Z4 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Trav1A0A075B5Z4 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC22.52■■□□□ 1.2
Trav1A0A075B5Z4 AC157572.2-201ENSMUST00000226970 908 ntBASIC22.52■■□□□ 1.2
Trav1A0A075B5Z4 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trav1A0A075B5Z4 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.19
Trav1A0A075B5Z4 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC22.51■■□□□ 1.19
Trav1A0A075B5Z4 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC22.51■■□□□ 1.19
Trav1A0A075B5Z4 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Trav1A0A075B5Z4 Gm9397-201ENSMUST00000200125 605 ntBASIC22.5■■□□□ 1.19
Trav1A0A075B5Z4 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC22.49■■□□□ 1.19
Trav1A0A075B5Z4 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Trav1A0A075B5Z4 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC22.48■■□□□ 1.19
Trav1A0A075B5Z4 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
Trav1A0A075B5Z4 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
Trav1A0A075B5Z4 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Trav1A0A075B5Z4 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
Trav1A0A075B5Z4 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
Trav1A0A075B5Z4 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC22.45■■□□□ 1.18
Trav1A0A075B5Z4 Gm24970-201ENSMUST00000175582 82 ntBASIC22.45■■□□□ 1.18
Trav1A0A075B5Z4 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC22.45■■□□□ 1.18
Trav1A0A075B5Z4 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Trav1A0A075B5Z4 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trav1A0A075B5Z4 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Trav1A0A075B5Z4 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trav1A0A075B5Z4 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC22.44■■□□□ 1.18
Trav1A0A075B5Z4 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Trav1A0A075B5Z4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav1A0A075B5Z4 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Trav1A0A075B5Z4 Tdp2-203ENSMUST00000223804 1136 ntBASIC22.43■■□□□ 1.18
Trav1A0A075B5Z4 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav1A0A075B5Z4 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC22.42■■□□□ 1.18
Trav1A0A075B5Z4 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Trav1A0A075B5Z4 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Trav1A0A075B5Z4 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC22.41■■□□□ 1.18
Trav1A0A075B5Z4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Trav1A0A075B5Z4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Trav1A0A075B5Z4 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Trav1A0A075B5Z4 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms