Protein–RNA interactions for Protein: Q9Z0H3

Smarcb1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, mousemouse

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcb1Q9Z0H3 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Smarcb1Q9Z0H3 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Smarcb1Q9Z0H3 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Smarcb1Q9Z0H3 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Smarcb1Q9Z0H3 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Smarcb1Q9Z0H3 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Smarcb1Q9Z0H3 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Smarcb1Q9Z0H3 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
Smarcb1Q9Z0H3 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Smarcb1Q9Z0H3 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Smarcb1Q9Z0H3 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Smarcb1Q9Z0H3 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Smarcb1Q9Z0H3 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Smarcb1Q9Z0H3 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Smarcb1Q9Z0H3 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Smarcb1Q9Z0H3 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Smarcb1Q9Z0H3 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Smarcb1Q9Z0H3 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.1■■□□□ 1.77
Smarcb1Q9Z0H3 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.1■■□□□ 1.77
Smarcb1Q9Z0H3 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Smarcb1Q9Z0H3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Smarcb1Q9Z0H3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Smarcb1Q9Z0H3 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
Smarcb1Q9Z0H3 Gm9939-201ENSMUST00000067161 1154 ntBASIC26.09■■□□□ 1.77
Smarcb1Q9Z0H3 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26.08■■□□□ 1.76
Smarcb1Q9Z0H3 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Smarcb1Q9Z0H3 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Smarcb1Q9Z0H3 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Smarcb1Q9Z0H3 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
Smarcb1Q9Z0H3 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
Smarcb1Q9Z0H3 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
Smarcb1Q9Z0H3 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.03■■□□□ 1.76
Smarcb1Q9Z0H3 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Smarcb1Q9Z0H3 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
Smarcb1Q9Z0H3 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Smarcb1Q9Z0H3 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Smarcb1Q9Z0H3 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Smarcb1Q9Z0H3 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26■■□□□ 1.75
Smarcb1Q9Z0H3 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Smarcb1Q9Z0H3 Gm8503-201ENSMUST00000118131 455 ntBASIC25.99■■□□□ 1.75
Smarcb1Q9Z0H3 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC25.98■■□□□ 1.75
Smarcb1Q9Z0H3 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Smarcb1Q9Z0H3 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Smarcb1Q9Z0H3 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Smarcb1Q9Z0H3 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Smarcb1Q9Z0H3 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Smarcb1Q9Z0H3 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Smarcb1Q9Z0H3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC25.95■■□□□ 1.75
Smarcb1Q9Z0H3 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
Smarcb1Q9Z0H3 Gm6821-201ENSMUST00000107540 542 ntBASIC25.94■■□□□ 1.74
Smarcb1Q9Z0H3 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
Smarcb1Q9Z0H3 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Smarcb1Q9Z0H3 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC25.91■■□□□ 1.74
Smarcb1Q9Z0H3 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC25.91■■□□□ 1.74
Smarcb1Q9Z0H3 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Smarcb1Q9Z0H3 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC25.91■■□□□ 1.74
Smarcb1Q9Z0H3 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Smarcb1Q9Z0H3 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
Smarcb1Q9Z0H3 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
Smarcb1Q9Z0H3 Gm42809-201ENSMUST00000198429 1138 ntBASIC25.87■■□□□ 1.73
Smarcb1Q9Z0H3 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC25.86■■□□□ 1.73
Smarcb1Q9Z0H3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC25.86■■□□□ 1.73
Smarcb1Q9Z0H3 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Smarcb1Q9Z0H3 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Smarcb1Q9Z0H3 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Smarcb1Q9Z0H3 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Smarcb1Q9Z0H3 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC25.84■■□□□ 1.73
Smarcb1Q9Z0H3 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Smarcb1Q9Z0H3 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
Smarcb1Q9Z0H3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
Smarcb1Q9Z0H3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Smarcb1Q9Z0H3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
Smarcb1Q9Z0H3 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Smarcb1Q9Z0H3 Nkain2-201ENSMUST00000092602 558 ntBASIC25.82■■□□□ 1.72
Smarcb1Q9Z0H3 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC25.8■■□□□ 1.72
Smarcb1Q9Z0H3 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC25.8■■□□□ 1.72
Smarcb1Q9Z0H3 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Smarcb1Q9Z0H3 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC25.8■■□□□ 1.72
Smarcb1Q9Z0H3 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Smarcb1Q9Z0H3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Smarcb1Q9Z0H3 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Smarcb1Q9Z0H3 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
Smarcb1Q9Z0H3 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Smarcb1Q9Z0H3 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Smarcb1Q9Z0H3 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Smarcb1Q9Z0H3 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Smarcb1Q9Z0H3 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Smarcb1Q9Z0H3 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
Smarcb1Q9Z0H3 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Smarcb1Q9Z0H3 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Smarcb1Q9Z0H3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Smarcb1Q9Z0H3 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC25.73■■□□□ 1.71
Smarcb1Q9Z0H3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Smarcb1Q9Z0H3 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Smarcb1Q9Z0H3 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Smarcb1Q9Z0H3 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC25.7■■□□□ 1.7
Smarcb1Q9Z0H3 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Smarcb1Q9Z0H3 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Smarcb1Q9Z0H3 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
Smarcb1Q9Z0H3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Retrieved 100 of 76,532 protein–RNA pairs in 120.2 ms