Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC23.91■■□□□ 1.42
Msh4Q99MT2 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC23.91■■□□□ 1.42
Msh4Q99MT2 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Msh4Q99MT2 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Msh4Q99MT2 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Msh4Q99MT2 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC23.9■■□□□ 1.42
Msh4Q99MT2 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Msh4Q99MT2 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Msh4Q99MT2 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Msh4Q99MT2 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC23.88■■□□□ 1.41
Msh4Q99MT2 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
Msh4Q99MT2 Amer2-203ENSMUST00000225247 2662 ntBASIC23.87■■□□□ 1.41
Msh4Q99MT2 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Msh4Q99MT2 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Msh4Q99MT2 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Msh4Q99MT2 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Msh4Q99MT2 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Msh4Q99MT2 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Msh4Q99MT2 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.84■■□□□ 1.41
Msh4Q99MT2 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Msh4Q99MT2 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Msh4Q99MT2 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Msh4Q99MT2 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Msh4Q99MT2 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Msh4Q99MT2 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC23.82■■□□□ 1.4
Msh4Q99MT2 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Msh4Q99MT2 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.4
Msh4Q99MT2 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Msh4Q99MT2 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Msh4Q99MT2 Gm30346-201ENSMUST00000218641 1699 ntBASIC23.79■■□□□ 1.4
Msh4Q99MT2 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Msh4Q99MT2 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Msh4Q99MT2 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Msh4Q99MT2 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC23.77■■□□□ 1.4
Msh4Q99MT2 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Msh4Q99MT2 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Msh4Q99MT2 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Msh4Q99MT2 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC23.75■■□□□ 1.39
Msh4Q99MT2 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
Msh4Q99MT2 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Msh4Q99MT2 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Msh4Q99MT2 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Msh4Q99MT2 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC23.74■■□□□ 1.39
Msh4Q99MT2 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Msh4Q99MT2 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Msh4Q99MT2 Gm24970-201ENSMUST00000175582 82 ntBASIC23.73■■□□□ 1.39
Msh4Q99MT2 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
Msh4Q99MT2 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Msh4Q99MT2 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Msh4Q99MT2 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Msh4Q99MT2 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Msh4Q99MT2 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Msh4Q99MT2 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC23.71■■□□□ 1.39
Msh4Q99MT2 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Msh4Q99MT2 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Msh4Q99MT2 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Msh4Q99MT2 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Msh4Q99MT2 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
Msh4Q99MT2 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Msh4Q99MT2 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Msh4Q99MT2 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Msh4Q99MT2 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Msh4Q99MT2 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Msh4Q99MT2 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Msh4Q99MT2 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Msh4Q99MT2 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.66■■□□□ 1.38
Msh4Q99MT2 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Msh4Q99MT2 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.66■■□□□ 1.38
Msh4Q99MT2 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Msh4Q99MT2 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC23.64■■□□□ 1.37
Msh4Q99MT2 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Msh4Q99MT2 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Msh4Q99MT2 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC23.64■■□□□ 1.37
Msh4Q99MT2 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Msh4Q99MT2 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Msh4Q99MT2 Gm43863-201ENSMUST00000203822 1192 ntBASIC23.63■■□□□ 1.37
Msh4Q99MT2 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.63■■□□□ 1.37
Msh4Q99MT2 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Msh4Q99MT2 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC23.62■■□□□ 1.37
Msh4Q99MT2 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Msh4Q99MT2 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Msh4Q99MT2 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Msh4Q99MT2 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
Msh4Q99MT2 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Msh4Q99MT2 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Msh4Q99MT2 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Msh4Q99MT2 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Msh4Q99MT2 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Msh4Q99MT2 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
Msh4Q99MT2 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Msh4Q99MT2 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Msh4Q99MT2 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Msh4Q99MT2 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Msh4Q99MT2 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
Msh4Q99MT2 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Msh4Q99MT2 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Msh4Q99MT2 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Msh4Q99MT2 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC23.54■■□□□ 1.36
Msh4Q99MT2 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC23.54■■□□□ 1.36
Msh4Q99MT2 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 9.6 ms