Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Col4a1P02463 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC31.82■■■□□ 2.68
Col4a1P02463 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
Col4a1P02463 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Col4a1P02463 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.81■■■□□ 2.68
Col4a1P02463 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Col4a1P02463 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
Col4a1P02463 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Col4a1P02463 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Col4a1P02463 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC31.77■■■□□ 2.68
Col4a1P02463 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
Col4a1P02463 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
Col4a1P02463 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
Col4a1P02463 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
Col4a1P02463 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Col4a1P02463 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Col4a1P02463 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
Col4a1P02463 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
Col4a1P02463 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Col4a1P02463 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Col4a1P02463 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
Col4a1P02463 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
Col4a1P02463 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Col4a1P02463 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Col4a1P02463 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Col4a1P02463 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
Col4a1P02463 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Col4a1P02463 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC31.64■■■□□ 2.66
Col4a1P02463 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Col4a1P02463 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
Col4a1P02463 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC31.64■■■□□ 2.65
Col4a1P02463 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Col4a1P02463 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC31.62■■■□□ 2.65
Col4a1P02463 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Col4a1P02463 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
Col4a1P02463 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Col4a1P02463 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Col4a1P02463 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC31.59■■■□□ 2.65
Col4a1P02463 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC31.58■■■□□ 2.65
Col4a1P02463 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.56■■■□□ 2.64
Col4a1P02463 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Col4a1P02463 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
Col4a1P02463 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col4a1P02463 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
Col4a1P02463 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC31.52■■■□□ 2.64
Col4a1P02463 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Col4a1P02463 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
Col4a1P02463 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
Col4a1P02463 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
Col4a1P02463 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Col4a1P02463 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Col4a1P02463 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Col4a1P02463 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col4a1P02463 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC31.47■■■□□ 2.63
Col4a1P02463 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Col4a1P02463 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Col4a1P02463 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC31.44■■■□□ 2.62
Col4a1P02463 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC31.44■■■□□ 2.62
Col4a1P02463 Nkain2-201ENSMUST00000092602 558 ntBASIC31.44■■■□□ 2.62
Col4a1P02463 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Col4a1P02463 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC31.42■■■□□ 2.62
Col4a1P02463 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Col4a1P02463 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
Col4a1P02463 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Col4a1P02463 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Col4a1P02463 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Col4a1P02463 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col4a1P02463 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Col4a1P02463 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Col4a1P02463 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC31.35■■■□□ 2.61
Col4a1P02463 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col4a1P02463 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col4a1P02463 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC31.32■■■□□ 2.6
Col4a1P02463 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC31.32■■■□□ 2.6
Col4a1P02463 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC31.32■■■□□ 2.6
Col4a1P02463 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
Col4a1P02463 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col4a1P02463 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC31.31■■■□□ 2.6
Col4a1P02463 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC31.31■■■□□ 2.6
Col4a1P02463 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col4a1P02463 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC31.3■■■□□ 2.6
Col4a1P02463 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Col4a1P02463 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC31.27■■■□□ 2.6
Col4a1P02463 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Col4a1P02463 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Col4a1P02463 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
Col4a1P02463 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
Col4a1P02463 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Col4a1P02463 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Col4a1P02463 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.22■■■□□ 2.59
Col4a1P02463 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC31.22■■■□□ 2.59
Col4a1P02463 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Col4a1P02463 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC31.21■■■□□ 2.59
Col4a1P02463 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
Col4a1P02463 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
Col4a1P02463 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
Col4a1P02463 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Col4a1P02463 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
Col4a1P02463 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Col4a1P02463 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms