Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CtcfQ61164 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CtcfQ61164 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CtcfQ61164 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CtcfQ61164 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.72■□□□□ 0.91
CtcfQ61164 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CtcfQ61164 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CtcfQ61164 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CtcfQ61164 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.72■□□□□ 0.91
CtcfQ61164 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.72■□□□□ 0.91
CtcfQ61164 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CtcfQ61164 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CtcfQ61164 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CtcfQ61164 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CtcfQ61164 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CtcfQ61164 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CtcfQ61164 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CtcfQ61164 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CtcfQ61164 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CtcfQ61164 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.7■□□□□ 0.9
CtcfQ61164 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CtcfQ61164 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CtcfQ61164 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CtcfQ61164 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.7■□□□□ 0.9
CtcfQ61164 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CtcfQ61164 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CtcfQ61164 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CtcfQ61164 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CtcfQ61164 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.69■□□□□ 0.9
CtcfQ61164 Spcs1-204ENSMUST00000226782 949 ntBASIC20.69■□□□□ 0.9
CtcfQ61164 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.69■□□□□ 0.9
CtcfQ61164 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CtcfQ61164 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CtcfQ61164 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CtcfQ61164 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CtcfQ61164 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CtcfQ61164 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CtcfQ61164 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.68■□□□□ 0.9
CtcfQ61164 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CtcfQ61164 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.68■□□□□ 0.9
CtcfQ61164 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
CtcfQ61164 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CtcfQ61164 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CtcfQ61164 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.67■□□□□ 0.9
CtcfQ61164 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CtcfQ61164 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CtcfQ61164 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CtcfQ61164 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.66■□□□□ 0.9
CtcfQ61164 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.66■□□□□ 0.9
CtcfQ61164 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.66■□□□□ 0.9
CtcfQ61164 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CtcfQ61164 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.65■□□□□ 0.9
CtcfQ61164 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CtcfQ61164 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CtcfQ61164 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.64■□□□□ 0.9
CtcfQ61164 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms