Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdk5rap3Q99LM2 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdk5rap3Q99LM2 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdk5rap3Q99LM2 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 BC021767-201ENSMUST00000126387 1716 ntBASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cdk5rap3Q99LM2 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
Cdk5rap3Q99LM2 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
Cdk5rap3Q99LM2 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdk5rap3Q99LM2 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Cdk5rap3Q99LM2 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.75■□□□□ 0.75
Cdk5rap3Q99LM2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdk5rap3Q99LM2 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdk5rap3Q99LM2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdk5rap3Q99LM2 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cdk5rap3Q99LM2 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cdk5rap3Q99LM2 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Gm5576-201ENSMUST00000075809 1236 ntBASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdk5rap3Q99LM2 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cdk5rap3Q99LM2 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cdk5rap3Q99LM2 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cdk5rap3Q99LM2 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cdk5rap3Q99LM2 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cdk5rap3Q99LM2 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Cdk5rap3Q99LM2 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.72■□□□□ 0.75
Cdk5rap3Q99LM2 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Cdk5rap3Q99LM2 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdk5rap3Q99LM2 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdk5rap3Q99LM2 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms