Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Clp1Q99LI9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.32■□□□□ 0.84
Clp1Q99LI9 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Clp1Q99LI9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clp1Q99LI9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Clp1Q99LI9 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clp1Q99LI9 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC20.31■□□□□ 0.84
Clp1Q99LI9 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clp1Q99LI9 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clp1Q99LI9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clp1Q99LI9 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clp1Q99LI9 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.3■□□□□ 0.84
Clp1Q99LI9 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Gm6576-201ENSMUST00000169678 883 ntBASIC20.3■□□□□ 0.84
Clp1Q99LI9 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Clp1Q99LI9 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.3■□□□□ 0.84
Clp1Q99LI9 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.3■□□□□ 0.84
Clp1Q99LI9 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Clp1Q99LI9 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Clp1Q99LI9 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Clp1Q99LI9 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Clp1Q99LI9 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clp1Q99LI9 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.28■□□□□ 0.84
Clp1Q99LI9 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.28■□□□□ 0.84
Clp1Q99LI9 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clp1Q99LI9 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clp1Q99LI9 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clp1Q99LI9 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Clp1Q99LI9 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Clp1Q99LI9 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Clp1Q99LI9 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Clp1Q99LI9 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Clp1Q99LI9 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.27■□□□□ 0.84
Clp1Q99LI9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.27■□□□□ 0.84
Clp1Q99LI9 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Clp1Q99LI9 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Clp1Q99LI9 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clp1Q99LI9 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clp1Q99LI9 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clp1Q99LI9 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.24■□□□□ 0.83
Clp1Q99LI9 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Clp1Q99LI9 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.23■□□□□ 0.83
Clp1Q99LI9 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 141.9 ms