Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
H2afb1S4R1E0 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
H2afb1S4R1E0 Gm26115-201ENSMUST00000175605 87 ntBASIC22.65■■□□□ 1.22
H2afb1S4R1E0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
H2afb1S4R1E0 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
H2afb1S4R1E0 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
H2afb1S4R1E0 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
H2afb1S4R1E0 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
H2afb1S4R1E0 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
H2afb1S4R1E0 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
H2afb1S4R1E0 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC22.62■■□□□ 1.21
H2afb1S4R1E0 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
H2afb1S4R1E0 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22.61■■□□□ 1.21
H2afb1S4R1E0 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
H2afb1S4R1E0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
H2afb1S4R1E0 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
H2afb1S4R1E0 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
H2afb1S4R1E0 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
H2afb1S4R1E0 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
H2afb1S4R1E0 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
H2afb1S4R1E0 Gm8109-201ENSMUST00000194076 746 ntBASIC22.57■■□□□ 1.2
H2afb1S4R1E0 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
H2afb1S4R1E0 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
H2afb1S4R1E0 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
H2afb1S4R1E0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22.55■■□□□ 1.2
H2afb1S4R1E0 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
H2afb1S4R1E0 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
H2afb1S4R1E0 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
H2afb1S4R1E0 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC22.54■■□□□ 1.2
H2afb1S4R1E0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22.54■■□□□ 1.2
H2afb1S4R1E0 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC22.51■■□□□ 1.19
H2afb1S4R1E0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
H2afb1S4R1E0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
H2afb1S4R1E0 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
H2afb1S4R1E0 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
H2afb1S4R1E0 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
H2afb1S4R1E0 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.46■■□□□ 1.19
H2afb1S4R1E0 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
H2afb1S4R1E0 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.45■■□□□ 1.18
H2afb1S4R1E0 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
H2afb1S4R1E0 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
H2afb1S4R1E0 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
H2afb1S4R1E0 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.44■■□□□ 1.18
H2afb1S4R1E0 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
H2afb1S4R1E0 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
H2afb1S4R1E0 Gm43445-201ENSMUST00000198564 2091 ntBASIC22.42■■□□□ 1.18
H2afb1S4R1E0 Peli2-204ENSMUST00000226513 1320 ntBASIC22.41■■□□□ 1.18
H2afb1S4R1E0 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
H2afb1S4R1E0 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
H2afb1S4R1E0 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
H2afb1S4R1E0 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
H2afb1S4R1E0 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
H2afb1S4R1E0 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
H2afb1S4R1E0 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
H2afb1S4R1E0 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.39■■□□□ 1.17
H2afb1S4R1E0 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
H2afb1S4R1E0 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
H2afb1S4R1E0 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
H2afb1S4R1E0 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
H2afb1S4R1E0 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
H2afb1S4R1E0 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
H2afb1S4R1E0 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
H2afb1S4R1E0 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
H2afb1S4R1E0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
H2afb1S4R1E0 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
H2afb1S4R1E0 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
H2afb1S4R1E0 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
H2afb1S4R1E0 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
H2afb1S4R1E0 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
H2afb1S4R1E0 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
H2afb1S4R1E0 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
H2afb1S4R1E0 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
H2afb1S4R1E0 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
H2afb1S4R1E0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
H2afb1S4R1E0 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
H2afb1S4R1E0 Gm30346-201ENSMUST00000218641 1699 ntBASIC22.3■■□□□ 1.16
H2afb1S4R1E0 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
H2afb1S4R1E0 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
H2afb1S4R1E0 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
H2afb1S4R1E0 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
H2afb1S4R1E0 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
H2afb1S4R1E0 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
H2afb1S4R1E0 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
H2afb1S4R1E0 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
H2afb1S4R1E0 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
H2afb1S4R1E0 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
H2afb1S4R1E0 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
H2afb1S4R1E0 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
H2afb1S4R1E0 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC22.25■■□□□ 1.15
H2afb1S4R1E0 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
H2afb1S4R1E0 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
H2afb1S4R1E0 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
H2afb1S4R1E0 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb1S4R1E0 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb1S4R1E0 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb1S4R1E0 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb1S4R1E0 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
H2afb1S4R1E0 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
H2afb1S4R1E0 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22.22■■□□□ 1.15
H2afb1S4R1E0 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms