Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
Ddb1Q3U1J4 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC33.7■■■□□ 2.99
Ddb1Q3U1J4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
Ddb1Q3U1J4 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
Ddb1Q3U1J4 Gm43863-201ENSMUST00000203822 1192 ntBASIC33.68■■■□□ 2.98
Ddb1Q3U1J4 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC33.67■■■□□ 2.98
Ddb1Q3U1J4 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC33.64■■■□□ 2.98
Ddb1Q3U1J4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
Ddb1Q3U1J4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
Ddb1Q3U1J4 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
Ddb1Q3U1J4 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
Ddb1Q3U1J4 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
Ddb1Q3U1J4 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC33.6■■■□□ 2.97
Ddb1Q3U1J4 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC33.58■■■□□ 2.97
Ddb1Q3U1J4 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
Ddb1Q3U1J4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
Ddb1Q3U1J4 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Ddb1Q3U1J4 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC33.54■■■□□ 2.96
Ddb1Q3U1J4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Ddb1Q3U1J4 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC33.53■■■□□ 2.96
Ddb1Q3U1J4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC33.53■■■□□ 2.96
Ddb1Q3U1J4 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC33.52■■■□□ 2.96
Ddb1Q3U1J4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Ddb1Q3U1J4 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC33.5■■■□□ 2.95
Ddb1Q3U1J4 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC33.49■■■□□ 2.95
Ddb1Q3U1J4 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Ddb1Q3U1J4 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Ddb1Q3U1J4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
Ddb1Q3U1J4 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
Ddb1Q3U1J4 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC33.42■■■□□ 2.94
Ddb1Q3U1J4 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC33.41■■■□□ 2.94
Ddb1Q3U1J4 AC157572.2-201ENSMUST00000226970 908 ntBASIC33.39■■■□□ 2.94
Ddb1Q3U1J4 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Ddb1Q3U1J4 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC33.38■■■□□ 2.93
Ddb1Q3U1J4 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC33.38■■■□□ 2.93
Ddb1Q3U1J4 Gm42809-201ENSMUST00000198429 1138 ntBASIC33.37■■■□□ 2.93
Ddb1Q3U1J4 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC33.36■■■□□ 2.93
Ddb1Q3U1J4 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
Ddb1Q3U1J4 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC33.31■■■□□ 2.92
Ddb1Q3U1J4 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
Ddb1Q3U1J4 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
Ddb1Q3U1J4 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC33.29■■■□□ 2.92
Ddb1Q3U1J4 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
Ddb1Q3U1J4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
Ddb1Q3U1J4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC33.27■■■□□ 2.92
Ddb1Q3U1J4 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC33.27■■■□□ 2.92
Ddb1Q3U1J4 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC33.26■■■□□ 2.91
Ddb1Q3U1J4 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
Ddb1Q3U1J4 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC33.24■■■□□ 2.91
Ddb1Q3U1J4 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC33.23■■■□□ 2.91
Ddb1Q3U1J4 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC33.22■■■□□ 2.91
Ddb1Q3U1J4 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Ddb1Q3U1J4 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.21■■■□□ 2.91
Ddb1Q3U1J4 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Ddb1Q3U1J4 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC33.18■■■□□ 2.9
Ddb1Q3U1J4 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC33.18■■■□□ 2.9
Ddb1Q3U1J4 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Ddb1Q3U1J4 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Ddb1Q3U1J4 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC33.17■■■□□ 2.9
Ddb1Q3U1J4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Ddb1Q3U1J4 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC33.15■■■□□ 2.9
Ddb1Q3U1J4 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC33.15■■■□□ 2.9
Ddb1Q3U1J4 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
Ddb1Q3U1J4 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC33.15■■■□□ 2.9
Ddb1Q3U1J4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC33.14■■■□□ 2.9
Ddb1Q3U1J4 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC33.14■■■□□ 2.9
Ddb1Q3U1J4 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC33.12■■■□□ 2.89
Ddb1Q3U1J4 Nkain2-201ENSMUST00000092602 558 ntBASIC33.11■■■□□ 2.89
Ddb1Q3U1J4 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Ddb1Q3U1J4 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
Ddb1Q3U1J4 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
Ddb1Q3U1J4 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Ddb1Q3U1J4 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC33.07■■■□□ 2.88
Ddb1Q3U1J4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC33.07■■■□□ 2.88
Ddb1Q3U1J4 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Ddb1Q3U1J4 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Ddb1Q3U1J4 Gm7432-201ENSMUST00000210343 879 ntBASIC33.05■■■□□ 2.88
Ddb1Q3U1J4 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC33.04■■■□□ 2.88
Ddb1Q3U1J4 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
Ddb1Q3U1J4 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC33.02■■■□□ 2.88
Ddb1Q3U1J4 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC33.02■■■□□ 2.88
Ddb1Q3U1J4 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC33■■■□□ 2.87
Ddb1Q3U1J4 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
Ddb1Q3U1J4 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC32.99■■■□□ 2.87
Ddb1Q3U1J4 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Ddb1Q3U1J4 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
Ddb1Q3U1J4 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
Ddb1Q3U1J4 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
Ddb1Q3U1J4 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC32.96■■■□□ 2.87
Ddb1Q3U1J4 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
Ddb1Q3U1J4 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
Ddb1Q3U1J4 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC32.93■■■□□ 2.86
Ddb1Q3U1J4 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Ddb1Q3U1J4 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Ddb1Q3U1J4 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
Ddb1Q3U1J4 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC32.91■■■□□ 2.86
Ddb1Q3U1J4 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Ddb1Q3U1J4 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Ddb1Q3U1J4 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Ddb1Q3U1J4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC32.89■■■□□ 2.85
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms