Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC24.26■■□□□ 1.47
Ptchd3Q0EEE2 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ptchd3Q0EEE2 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC24.24■■□□□ 1.47
Ptchd3Q0EEE2 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ptchd3Q0EEE2 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
Ptchd3Q0EEE2 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Ptchd3Q0EEE2 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Ptchd3Q0EEE2 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Ptchd3Q0EEE2 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.19■■□□□ 1.46
Ptchd3Q0EEE2 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ptchd3Q0EEE2 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ptchd3Q0EEE2 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC24.17■■□□□ 1.46
Ptchd3Q0EEE2 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ptchd3Q0EEE2 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ptchd3Q0EEE2 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ptchd3Q0EEE2 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
Ptchd3Q0EEE2 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Ptchd3Q0EEE2 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Ptchd3Q0EEE2 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Ptchd3Q0EEE2 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
Ptchd3Q0EEE2 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
Ptchd3Q0EEE2 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ptchd3Q0EEE2 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
Ptchd3Q0EEE2 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Ptchd3Q0EEE2 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Ptchd3Q0EEE2 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC24.04■■□□□ 1.44
Ptchd3Q0EEE2 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC24.04■■□□□ 1.44
Ptchd3Q0EEE2 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Ptchd3Q0EEE2 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
Ptchd3Q0EEE2 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Ptchd3Q0EEE2 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Ptchd3Q0EEE2 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
Ptchd3Q0EEE2 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Ptchd3Q0EEE2 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Ptchd3Q0EEE2 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Ptchd3Q0EEE2 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Ptchd3Q0EEE2 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Ptchd3Q0EEE2 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ptchd3Q0EEE2 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
Ptchd3Q0EEE2 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
Ptchd3Q0EEE2 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ptchd3Q0EEE2 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Ptchd3Q0EEE2 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Ptchd3Q0EEE2 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC23.93■■□□□ 1.42
Ptchd3Q0EEE2 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Ptchd3Q0EEE2 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ptchd3Q0EEE2 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Ptchd3Q0EEE2 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ptchd3Q0EEE2 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ptchd3Q0EEE2 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.89■■□□□ 1.42
Ptchd3Q0EEE2 Fezf2-202ENSMUST00000224023 1917 ntBASIC23.89■■□□□ 1.42
Ptchd3Q0EEE2 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ptchd3Q0EEE2 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.88■■□□□ 1.41
Ptchd3Q0EEE2 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ptchd3Q0EEE2 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.86■■□□□ 1.41
Ptchd3Q0EEE2 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ptchd3Q0EEE2 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Ptchd3Q0EEE2 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ptchd3Q0EEE2 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ptchd3Q0EEE2 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ptchd3Q0EEE2 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ptchd3Q0EEE2 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ptchd3Q0EEE2 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
Ptchd3Q0EEE2 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.82■■□□□ 1.4
Ptchd3Q0EEE2 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ptchd3Q0EEE2 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.81■■□□□ 1.4
Ptchd3Q0EEE2 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ptchd3Q0EEE2 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ptchd3Q0EEE2 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ptchd3Q0EEE2 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ptchd3Q0EEE2 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Ptchd3Q0EEE2 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ptchd3Q0EEE2 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Ptchd3Q0EEE2 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ptchd3Q0EEE2 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.78■■□□□ 1.4
Ptchd3Q0EEE2 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ptchd3Q0EEE2 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ptchd3Q0EEE2 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ptchd3Q0EEE2 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ptchd3Q0EEE2 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Ptchd3Q0EEE2 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Ptchd3Q0EEE2 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Ptchd3Q0EEE2 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Ptchd3Q0EEE2 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Ptchd3Q0EEE2 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Ptchd3Q0EEE2 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Ptchd3Q0EEE2 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Ptchd3Q0EEE2 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.73■■□□□ 1.39
Ptchd3Q0EEE2 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ptchd3Q0EEE2 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Ptchd3Q0EEE2 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Ptchd3Q0EEE2 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ptchd3Q0EEE2 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
Ptchd3Q0EEE2 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Ptchd3Q0EEE2 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Ptchd3Q0EEE2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.69■■□□□ 1.38
Ptchd3Q0EEE2 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Ptchd3Q0EEE2 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Ptchd3Q0EEE2 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Ptchd3Q0EEE2 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms