Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Shmt1P50431 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Shmt1P50431 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
Shmt1P50431 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC27.19■■□□□ 1.94
Shmt1P50431 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
Shmt1P50431 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
Shmt1P50431 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Shmt1P50431 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Shmt1P50431 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Shmt1P50431 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Shmt1P50431 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Shmt1P50431 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC27.13■■□□□ 1.93
Shmt1P50431 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
Shmt1P50431 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC27.08■■□□□ 1.93
Shmt1P50431 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
Shmt1P50431 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Shmt1P50431 Tdp2-203ENSMUST00000223804 1136 ntBASIC27.04■■□□□ 1.92
Shmt1P50431 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
Shmt1P50431 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Shmt1P50431 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Shmt1P50431 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Shmt1P50431 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Shmt1P50431 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Shmt1P50431 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Shmt1P50431 Gm30346-201ENSMUST00000218641 1699 ntBASIC26.98■■□□□ 1.91
Shmt1P50431 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Shmt1P50431 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
Shmt1P50431 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Shmt1P50431 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Shmt1P50431 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Shmt1P50431 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
Shmt1P50431 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.95■■□□□ 1.91
Shmt1P50431 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
Shmt1P50431 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
Shmt1P50431 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26.94■■□□□ 1.9
Shmt1P50431 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Shmt1P50431 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Shmt1P50431 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Shmt1P50431 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Shmt1P50431 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Shmt1P50431 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Shmt1P50431 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Shmt1P50431 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Shmt1P50431 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Shmt1P50431 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
Shmt1P50431 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Shmt1P50431 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Shmt1P50431 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Shmt1P50431 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC26.87■■□□□ 1.89
Shmt1P50431 Gm9397-201ENSMUST00000200125 605 ntBASIC26.87■■□□□ 1.89
Shmt1P50431 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC26.87■■□□□ 1.89
Shmt1P50431 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Shmt1P50431 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Shmt1P50431 Gm45855-201ENSMUST00000212546 880 ntBASIC26.85■■□□□ 1.89
Shmt1P50431 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Shmt1P50431 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Shmt1P50431 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Shmt1P50431 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.84■■□□□ 1.89
Shmt1P50431 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.84■■□□□ 1.89
Shmt1P50431 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.83■■□□□ 1.89
Shmt1P50431 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC26.83■■□□□ 1.88
Shmt1P50431 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC26.82■■□□□ 1.88
Shmt1P50431 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC26.82■■□□□ 1.88
Shmt1P50431 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Shmt1P50431 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Shmt1P50431 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
Shmt1P50431 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Shmt1P50431 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.78■■□□□ 1.88
Shmt1P50431 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
Shmt1P50431 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Shmt1P50431 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC26.76■■□□□ 1.87
Shmt1P50431 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
Shmt1P50431 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Shmt1P50431 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Shmt1P50431 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Shmt1P50431 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Shmt1P50431 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Shmt1P50431 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Shmt1P50431 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Shmt1P50431 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Shmt1P50431 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Shmt1P50431 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Shmt1P50431 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
Shmt1P50431 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC26.68■■□□□ 1.86
Shmt1P50431 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.68■■□□□ 1.86
Shmt1P50431 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Shmt1P50431 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Shmt1P50431 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.67■■□□□ 1.86
Shmt1P50431 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Shmt1P50431 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Shmt1P50431 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC26.65■■□□□ 1.86
Shmt1P50431 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Shmt1P50431 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Shmt1P50431 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.64■■□□□ 1.86
Shmt1P50431 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC26.64■■□□□ 1.85
Shmt1P50431 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Shmt1P50431 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Shmt1P50431 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
Shmt1P50431 Gm24970-201ENSMUST00000175582 82 ntBASIC26.62■■□□□ 1.85
Shmt1P50431 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 9.2 ms