Protein–RNA interactions for Protein: P04441

Cd74, H-2 class II histocompatibility antigen gamma chain, mousemouse

Predictions only

Length 279 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd74P04441 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cd74P04441 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Cd74P04441 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC20.88■□□□□ 0.93
Cd74P04441 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cd74P04441 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cd74P04441 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Cd74P04441 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cd74P04441 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cd74P04441 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cd74P04441 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cd74P04441 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Cd74P04441 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
Cd74P04441 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cd74P04441 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Cd74P04441 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Cd74P04441 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cd74P04441 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.82■□□□□ 0.92
Cd74P04441 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.81■□□□□ 0.92
Cd74P04441 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cd74P04441 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cd74P04441 Gm6658-202ENSMUST00000209493 1885 ntBASIC20.78■□□□□ 0.92
Cd74P04441 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC20.78■□□□□ 0.92
Cd74P04441 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cd74P04441 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.74■□□□□ 0.91
Cd74P04441 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd74P04441 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cd74P04441 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cd74P04441 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Cd74P04441 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cd74P04441 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Cd74P04441 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
Cd74P04441 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cd74P04441 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.71■□□□□ 0.91
Cd74P04441 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd74P04441 Gm45855-201ENSMUST00000212546 880 ntBASIC20.7■□□□□ 0.9
Cd74P04441 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC20.7■□□□□ 0.9
Cd74P04441 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cd74P04441 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Cd74P04441 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC20.69■□□□□ 0.9
Cd74P04441 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cd74P04441 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC20.66■□□□□ 0.9
Cd74P04441 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Cd74P04441 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cd74P04441 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cd74P04441 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cd74P04441 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cd74P04441 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cd74P04441 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cd74P04441 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC20.64■□□□□ 0.89
Cd74P04441 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cd74P04441 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cd74P04441 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cd74P04441 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cd74P04441 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cd74P04441 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Cd74P04441 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cd74P04441 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cd74P04441 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Cd74P04441 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cd74P04441 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cd74P04441 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cd74P04441 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cd74P04441 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Cd74P04441 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
Cd74P04441 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cd74P04441 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Cd74P04441 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC20.58■□□□□ 0.89
Cd74P04441 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cd74P04441 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cd74P04441 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cd74P04441 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cd74P04441 Gm9397-201ENSMUST00000200125 605 ntBASIC20.56■□□□□ 0.88
Cd74P04441 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cd74P04441 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cd74P04441 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cd74P04441 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cd74P04441 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
Cd74P04441 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cd74P04441 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cd74P04441 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
Cd74P04441 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Cd74P04441 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC20.53■□□□□ 0.88
Cd74P04441 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Cd74P04441 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cd74P04441 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Cd74P04441 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Cd74P04441 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.5■□□□□ 0.87
Cd74P04441 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cd74P04441 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Cd74P04441 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cd74P04441 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC20.49■□□□□ 0.87
Cd74P04441 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cd74P04441 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Cd74P04441 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC20.46■□□□□ 0.87
Cd74P04441 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC20.46■□□□□ 0.87
Cd74P04441 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
Cd74P04441 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cd74P04441 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.45■□□□□ 0.86
Cd74P04441 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cd74P04441 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms